A
Adam Skarshewski
Researcher at University of Queensland
Publications - 21
Citations - 4096
Adam Skarshewski is an academic researcher from University of Queensland. The author has contributed to research in topics: Genome & Metagenomics. The author has an hindex of 12, co-authored 17 publications receiving 3045 citations. Previous affiliations of Adam Skarshewski include Australian Centre for Plant Functional Genomics.
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Journal ArticleDOI
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
Donovan H. Parks,Maria Chuvochina,David W. Waite,Christian Rinke,Adam Skarshewski,Pierre-Alain Chaumeil,Philip Hugenholtz +6 more
TL;DR: This work used a concatenated protein phylogeny as the basis for a bacterial taxonomy that conservatively removes polyphyletic groups and normalizes taxonomic ranks on the basis of relative evolutionary divergence.
Journal ArticleDOI
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
Mads Albertsen,Philip Hugenholtz,Adam Skarshewski,Kåre Lehmann Nielsen,Gene W. Tyson,Per Halkjær Nielsen +5 more
TL;DR: Reanalysis of published metagenomes reveals that differential coverage binning facilitates recovery of more complete and higher fidelity genome bins than other currently used methods, which are primarily based on sequence composition.
Journal ArticleDOI
CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction
Florent E. Angly,Paul G. Dennis,Adam Skarshewski,Inka Vanwonterghem,Philip Hugenholtz,Gene W. Tyson +5 more
TL;DR: CopyRighter as mentioned in this paper parses microbial profiles and, because GCN estimates are pre-computed for all taxa in the reference taxonomy, rapidly corrects GCN bias.
Journal ArticleDOI
Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS.
Paul J. Berkman,Adam Skarshewski,Michal T. Lorenc,Kaitao Lai,Chris Duran,Edmund Y. S. Ling,Jiri Stiller,Lars Smits,Michael Imelfort,Sahana Manoli,Megan McKenzie,Marie Kubaláková,Hana Šimková,Jacqueline Batley,Delphine Fleury,Jaroslav Doležel,David Edwards +16 more
TL;DR: The results suggest that the sequencing of isolated chromosome arms can provide valuable information of the gene content of wheat and is a step towards whole-genome sequencing and variation discovery in this important crop.
Journal Article
Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS
Paul J. Berkman,Adam Skarshewski,Michal T. Lorenc,Kaitao Lai,Chris Duran,Edmund Y. S. Ling,Jiri Stiller,Lars Smits,Michael Imelfort,Sahana Manoli,Megan McKenzie,Marie Kubaláková,Hana Šimková,Jacqueline Batley,Delphine Fleury,Jaroslav Dolezel,David Edwards +16 more
TL;DR: In this paper, the authors used second-generation technology and appropriate algorithmic analysis to sequence and assemble low copy and genic regions of the chromosome arm 7DS of bread wheat (Triticum aestivum ).