J. Appl. Cryst.の発刊に際して

The plant hormone abscisic acid (ABA) acts as a developmental signal and as an integrator of environmental cues such as drought and cold. Key players in ABA signal transduction include the type 2C protein phosphatases (PP2Cs) ABI1 and ABI2, which act by negatively regulating ABA responses. In this study, we identify interactors of ABI1 and ABI2 which we have named regulatory components of ABA receptor (RCARs). In Arabidopsis, RCARs belong to a family with 14 members that share structural similarity with class 10 pathogen-related proteins. RCAR1 was shown to bind ABA, to mediate ABA-dependent inactivation of ABI1 or ABI2 in vitro, and to antagonize PP2C action in planta. Other RCARs also mediated ABA-dependent regulation of ABI1 and ABI2, consistent with a combinatorial assembly of receptor complexes.

http://science.sciencemag.org/content/sci/324/5930/1064.full.pdf

Regulators of PP2C Phosphatase Activity Function as Abscisic Acid Sensors

Lung Wa Chung,† W. M. C. Sameera,‡ Romain Ramozzi,‡ Alister J. Page, Miho Hatanaka,‡ Galina P. Petrova, Travis V. Harris,‡,⊥ Xin Li, Zhuofeng Ke, Fengyi Liu, Hai-Bei Li, Lina Ding, and Keiji Morokuma*,‡ †Department of Chemistry, South University of Science and Technology of China, Shenzhen 518055, China ‡Fukui Institute for Fundamental Chemistry, Kyoto University, 34-4 Takano Nishihiraki-cho, Sakyo, Kyoto 606-8103, Japan Newcastle Institute for Energy and Resources, The University of Newcastle, Callaghan 2308, Australia Faculty of Chemistry and Pharmacy, University of Sofia, Bulgaria Boulevard James Bourchier 1, 1164 Sofia, Bulgaria Department of Chemistry, State University of New York at Oswego, Oswego, New York 13126, United States State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China School of Chemistry and Chemical Engineering, Sun Yat-sen University, Guangzhou 510275, China Key Laboratory of Macromolecular Science of Shaanxi Province, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an, Shaanxi 710119, China School of Ocean, Shandong University, Weihai 264209, China School of Pharmaceutical Sciences, Zhengzhou University, 100 Kexue Avenue, Zhengzhou, Henan 450001, China

The ONIOM Method and Its Applications

Serum albumin first appeared in early vertebrates and is present in the plasma of all mammals. Its canonical structure supported by a conserved set of disulfide bridges is maintained in all mammalian serum albumins and any changes in sequence are highly correlated with evolution of the species. Previous structural investigations of mammalian serum albumins have only concentrated on human serum albumin (HSA), most likely as a consequence of crystallization and diffraction difficulties. Here, the crystal structures of serum albumins isolated from bovine, equine and leporine blood plasma are reported. The structure of bovine serum albumin (BSA) was determined at 2.47 A resolution, two crystal structures of equine serum albumin (ESA) were determined at resolutions of 2.32 and 2.04 A, and that of leporine serum albumin (LSA) was determined at 2.27 A resolution. These structures were compared in detail with the structure of HSA. The ligand-binding pockets in BSA, ESA and LSA revealed different amino-acid compositions and conformations in comparison to HSA in some cases; however, much more significant differences were observed on the surface of the molecules. BSA, which is one of the most extensively utilized proteins in laboratory practice and is used as an HSA substitute in many experiments, exhibits only 75.8% identity compared with HSA. The higher resolution crystal structure of ESA highlights the binding properties of this protein because it includes several bound compounds from the crystallization solution that provide additional structural information about potential ligand-binding pockets.

Structures of bovine, equine and leporine serum albumin.

Including Projector Augmented Wave Method: A Chemist’s Point of View Christian Bonhomme,*,† Christel Gervais,*,† Florence Babonneau,† Cristina Coelho,‡ Fred́eŕique Pourpoint,† Thierry Azaïs,† Sharon E. Ashbrook,* John M. Griffin, Jonathan R. Yates,* Francesco Mauri, and Chris J. Pickard †Laboratoire de Chimie de la Matier̀e Condenseé de Paris, Universite ́ Pierre et Marie Curie, Paris 06, CNRS UMR 7574, Colleg̀e de France, 75005 Paris, France ‡IMPC, Institut des Mateŕiaux de Paris Centre, FR2482, UPMC Universite ́ Pierre et Marie Curie Paris 06, Colleg̀e de France, 11 place Marcelin Berthelot, 75231 Paris Cedex 05, France School of Chemistry and EaStCHEM, University of St. Andrews, North Haugh, St. Andrews KY16 9ST, United Kingdom Department of Materials, University of Oxford, Oxford OX1 3PH, United Kingdom Laboratoire de Mineŕalogie Crystallographie, UMR CNRS 7590, Universite ́ Pierre et Marie Curie, UPMC, 75015 Paris, France Department of Physics and Astronomy, University College London, London WC1E 6BT, United Kingdom

First-principles calculation of NMR parameters using the gauge including projector augmented wave method:a chemist's point of view

Serum albumin, a protein naturally abundant in blood plasma, shows remarkable ligand binding properties of numerous endogenous and exogenous compounds. Most of serum albumin binding sites are able to interact with more than one class of ligands. Determining the protein-ligand interactions among mammalian serum albumins is essential for understanding the complexity of this transporter. We present three crystal structures of serum albumins in complexes with naproxen (NPS): bovine (BSA-NPS), equine (ESA-NPS), and leporine (LSA-NPS) determined to 2.58 A (C2), 2.42 A (P61), and 2.73 A (P212121) resolutions, respectively. A comparison of the structurally investigated complexes with the analogous complex of human serum albumin (HSA-NPS) revealed surprising differences in the number and distribution of naproxen binding sites. Bovine and leporine serum albumins possess three NPS binding sites, but ESA has only two. All three complexes of albumins studied here have two common naproxen locations, but BSA and LSA differ in the third NPS binding site. None of these binding sites coincides with the naproxen location in the HSA-NPS complex, which was obtained in the presence of other ligands besides naproxen. Even small differences in sequences of serum albumins from various species, especially in the area of the binding pockets, influence the affinity and the binding mode of naproxen to this transport protein. Proteins 2014; 82:2199–2208. © 2014 Wiley Periodicals, Inc.

Structural studies of bovine, equine, and leporine serum albumin complexes with naproxen.

Crystallographic studies of the complexes of bovine and equine serum albumin with 3,5-diiodosalicylic acid.

Lupinus luteus pathogenesis-related protein as a reservoir for cytokinin.

We solved the 1.8 A crystal structure of β-fructofuranosidase from Bifidobacterium longum KN29.1 – a unique enzyme that allows these probiotic bacteria to function in the human digestive system. The sequence of β-fructofuranosidase classifies it as belonging to the glycoside hydrolase family 32 (GH32). GH32 enzymes show a wide range of substrate specificity and different functions in various organisms. All enzymes from this family share a similar fold, containing two domains: an N-terminal five-bladed β-propeller and a C-terminal β-sandwich module. The active site is located in the centre of the β-propeller domain, in the bottom of a ‘funnel’. The binding site, −1, responsible for tight fructose binding, is highly conserved among the GH32 enzymes. Bifidobacterium longum KN29.1 β-fructofuranosidase has a 35-residue elongation of the N-terminus containing a five-turn α-helix, which distinguishes it from the other known members of the GH32 family. This new structural element could be one of the functional modifications of the enzyme that allows the bacteria to act in a human digestive system. We also solved the 1.8 A crystal structure of the β-fructofuranosidase complex with β-d-fructose, a hydrolysis product obtained by soaking apo crystal in raffinose.



Database Coordinates and structure factors have been deposited in the Protein Data Bank under accession codes: 3PIG and 3PIJ



Structured digital abstract



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-fructofuranosidase  binds to -fructofuranosidase by x-ray crystallography (View interaction)

https://febs.onlinelibrary.wiley.com/doi/pdf/10.1111/j.1742-4658.2011.08098.x

Anna Bujacz

Papers

Structures of bovine, equine and leporine serum albumin.

Structural studies of bovine, equine, and leporine serum albumin complexes with naproxen.

Crystallographic studies of the complexes of bovine and equine serum albumin with 3,5-diiodosalicylic acid.

Lupinus luteus pathogenesis-related protein as a reservoir for cytokinin.

Crystal structures of the apo form of β-fructofuranosidase from Bifidobacterium longum and its complex with fructose.