Showing papers by "Bart Kahr published in 2017"

Powder diffraction and crystal structure prediction identify four new coumarin polymorphs

Abstract: Coumarin, a simple, commodity chemical isolated from beans in 1820, has, to date, only yielded one solid state structure. Here, we report a rich polymorphism of coumarin grown from the melt. Four new metastable forms were identified and their crystal structures were solved using a combination of computational crystal structure prediction algorithms and X-ray powder diffraction. With five crystal structures, coumarin has become one of the few rigid molecules showing extensive polymorphism at ambient conditions. We demonstrate the crucial role of advanced electronic structure calculations including many-body dispersion effects for accurate ranking of the stability of coumarin polymorphs and the need to account for anharmonic vibrational contributions to their free energy. As such, coumarin is a model system for studying weak intermolecular interactions, crystallization mechanisms, and kinetic effects.

Crystal Growth with Macromolecular Additives.

Abstract: Interactions of macromolecules with growing crystalline surfaces play an important role in biomineralization, determine survival of some organisms at low temperatures, and offer a range of potential industrial applications. The current understanding of crystal growth processes in the presence of macromolecules, including peptides and proteins, is reviewed, with a focus on interactions between macromolecules and surfaces of crystalline materials, macromolecule adsorption on different types of crystal surfaces, crystallization kinetics in the presence of macromolecular additives, macromolecule incorporation, and defect generation. Throughout, special attention is paid to the selectivity of macromolecule adsorption on, and incorporation within, crystal surfaces. The special role played by the size and complexity of macromolecules as compared to other crystallization additives is emphasized.

The Third Ambient Aspirin Polymorph

Abstract: Polymorphism of aspirin (acetylsalicylic acid), one of the most widely consumed medications, was equivocal until the structure of a second polymorph II, similar in structure to the original form I, was reported in 2005 Here, the third ambient polymorph of aspirin is described It was crystallized from the melt, and its structure was determined using a combination of X-ray powder diffraction analysis and crystal structure prediction algorithms

DDT Polymorphism and the Lethality of Crystal Forms

Abstract: DDT (1,1,1-trichloro-2,2-bis(4-chlorophenyl)ethane), a contact insecticide with a rich and controversial history since its activity was discovered in 1939, has long been thought to be monomorphic. Herein we report the discovery and characterization of a second polymorph, designated Form II, which can be isolated as single crystals, but converts very slowly at room temperature to the form reported previously, now designated as Form I. Computations based on an evolutionary algorithm for crystal structure prediction revealed that Forms I and II are among the four lowest energy crystal structures of fifty calculated. A preliminary study of the contact insecticidal activity toward fruit flies (Drosophila melanogaster) indicates that Form II is more active, suggesting opportunities for more effective solid-state formulations that would allow reduced amounts of DDT, thereby minimizing environmental impact.

Orientation Control of Solution-Processed Organic Semiconductor Crystals To Improve Out-of-Plane Charge Mobility

Abstract: The crystallization of a series of triisopropylsilylethynyl (TIPS)-derivatized acene-based organic semiconductors drop cast from solution onto substrates was investigated as a function of the size of their conjugated cores. When drop cast onto a substrate, the molecules in TIPS-pentacene crystals adopt a “horizontal” orientation, with the long axis of the pentacene core parallel to the substrate surface. For crystals comprising molecules with dibenzopyrene, anthanthrene, and pyranthrene cores, two-dimensional X-ray diffraction patterns revealed the existence of a second population of crystals adopting a “vertical” molecular orientation with the long axis of the acene core perpendicular to the substrate surface. The ratio of the population of TIPS-pyranthrene crystals with molecules adopting horizontal versus vertical orientations was controlled by varying the surface energy of the underlying substrate. These crystals displayed orientation-dependent linear birefringence and linear dichroism, as observed by...

Double cone of eigendirections in optically active ethylenediammonium selenate crystals.

Abstract: Circular birefringence (CB) is generally responsible for only a small perturbation to the state of light polarization in crystals that also exhibit linear birefringence (LB). As such, the magnetoelectric tensor of gyration, which gives rise to CB and optical activity, is less well determined than the electric permittivity tensor in optical models of the Mueller matrix. To visualize the effect of the magnetoelectric tensor on polarimetric measurements, reported here are experimental mappings of the Mueller matrix and of the CB in a new chiral crystal with accidental null LB at an accessible optical frequency. Single crystals of ethylenediammonium selenate (EDSeO4) were synthesized and characterized by X-ray diffraction and Mueller matrix measurements in transmission and reflection. The crystals are isomorphous with the corresponding sulfate salt. They are tetragonal, space group P41(3)212. The constitutive relations of EDSeO4 were recovered using a partial wave summation of incoherent reflections. The extraordinary and ordinary refractive indices cross at 364 nm (3.41 eV), a scenario commonly called the `isotropic point' or `iso-index point'. At this wavelength, the magnetoelectric tensor fully describes the polarization transformation, giving rise to a double cone of eigendirections.

Optical Activity Anisotropy of Benzil

Abstract: Optical activity (OA) along the optic axis of crystalline benzil has been measured by many over the past 150 years. However, the OA anisotropy remains uncharacterized due to difficulties in sample preparation as well as competition with linear birefringence (LB). The challenges associated with measuring OA along low-symmetry directions in crystals have too often left scientists with only average values of nonresonant OA in solution, i.e., specific rotations, which continue to resist interpretation in terms of structure. Measuring OA anisotropy has been facilitated by recent advances in polarimetry and optical modeling and here we compare results from two distinct division-of-time polarimeters. The absolute structure of crystalline benzil was established for the first time. The optical rotation (OR) of (+)-crystalline benzil (space group P3121) perpendicular to the optic axis at the sodium D-line is −24.6 ± 1.1°/mm. A spectroscopic optical model in the transparent region of the crystal is provided. Electro...

Abuse of Rachel Carson and Misuse of DDT Science in the Service of Environmental Deregulation

Abstract: Fake news?? The contact insecticide DDT has been reappraised as a safe, life-saving compound by special interest groups committed to repealing environmental regulations. It is shown in this essay how some specific toxicological data has been misused by those aiming to disingenuously influence public policy. Graphic: Pestroy, a DDT-laced coating marketed in 1946 by Sherwin-Williams Research Laboratories.

Dynamics and unsteady morphologies at ice interfaces driven by D2O-H2O exchange.

Abstract: The growth dynamics of D2O ice in liquid H2O in a microfluidic device were investigated between the melting points of D2O ice (3.8 °C) and H2O ice (0 °C). As the temperature was decreased at rates between 0.002 °C/s and 0.1 °C/s, the ice front advanced but retreated immediately upon cessation of cooling, regardless of the temperature. This is a consequence of the competition between diffusion of H2O into the D2O ice, which favors melting of the interface, and the driving force for growth supplied by cooling. Raman microscopy tracked H/D exchange across the solid H2O–solid D2O interface, with diffusion coefficients consistent with transport of intact H2O molecules at the D2O ice interface. At fixed temperatures below 3 °C, the D2O ice front melted continuously, but at temperatures near 0 °C a scalloped interface morphology appeared with convex and concave sections that cycled between growth and retreat. This behavior, not observed for D2O ice in contact with D2O liquid or H2O ice in contact with H2O liquid, reflects a complex set of cooperative phenomena, including H/D exchange across the solid–liquid interface, latent heat exchange, local thermal gradients, and the Gibbs–Thomson effect on the melting points of the convex and concave features.

General framework for treating generation, propagation, and polarization of luminescence in anisotropic media

Abstract: Complete polarimeters deliver the full polarization transfer matrix of a medium that relates input polarization states to output polarization states. In order to interpret the Mueller matrix of a luminescent medium at the emission frequency, accountings are required for polarization transformations of the medium at the excitation frequency, the light scattering event, and the polarization transformations at the emission frequency. A general framework for this kind of analysis is presented herein. The fluorescence Mueller matrix is expressed as a product of Mueller matrices of the medium at the excitation and emission frequencies and a scattering matrix, integrated over path length. The Stokes vector for the incident light, evolving according to the Mueller matrix of the medium at the excitation frequency, is multiplied by the scattering matrix to give a Stokes vector of the emitted light along the propagation direction. The scattering matrix is derived from an incoherent orientation ensemble average over a phenomenological scattering tensor that embodies intrinsic molecular scattering proprieties, and dynamical processes that occur during the excited state. The general framework is evaluated for three anisotropic materials carrying luminescent dye molecules including the following: a chiral fluid, a stretched polymer film, and a chiral, biaxial crystal. In the latter case, the most complex, the Mueller matrix was collected in conoscopic illumination and the fluorescence Mueller matrix, mapped in k-space, was fully simulated by the strategy outlined above. Luminescence spectroscopy has typically stood apart from the developments in polarimetry of the past two generations. This need not be indefinite.