For many years, estuarine science has been the ‘poor relation’ in aquatic research – freshwater scientists ignored estuaries as they tended to get confused by salt and tides, and marine scientists were more preoccupied by large open systems. Estuaries were merely regarded by each group as either river mouths or sea inlets respectively. For the past four decades, however, estuaries (and other transitional waters) have been regarded as being ecosystems in their own right. Although often not termed as such, this has led to paradigms being generated to summarise estuarine structure and functioning and which relate to both the natural science and management of these systems. This paper defines, details and affirms these paradigms that can be grouped into those covering firstly the science (definitions, scales, linkages, productivity, tolerances and variability) and secondly the management (pressures, valuation, health and services) of estuaries. The more ‘science’ orientated paradigms incorporate the development and types of ecotones, the nature of stressed and variable systems (with specific reference to resilience and redundancy), the relationship between generalists and specialists produced by environmental tolerance, the relevance of scale in relation to functioning and connectivity, the sources of production and degree of productivity, the biodiversity-ecosystem functioning and the stress-subsidy debates. The more ‘management’ targeted paradigms include the development and effects of exogenic unmanaged pressures and endogenic managed pressures, the perception of health and the ability to manage estuaries (related to internal and external influences), and the influence of all of these on the production of ecosystem services and societal benefits.

Challenging paradigms in estuarine ecology and management

Tidal rivers are a vital and little studied nexus between physical oceanography and hydrology. It is only in the last few decades that substantial research efforts have been focused on the interactions of river discharge with tidal waves and storm surges into regions beyond the limit of salinity intrusion, a realm that can extend inland hundreds of kilometers. One key phenomenon resulting from this interaction is the emergence of large fortnightly tides, which are forced long waves with amplitudes that may increase beyond the point where astronomical tides have become extinct. These can be larger than the linear tide itself at more landward locations, and they greatly influence tidal river water levels and wetland inundation. Exploration of the spectral redistribution and attenuation of tidal energy in rivers has led to new appreciation of a wide range of consequences for fluvial and coastal sedimentology, delta evolution, wetland conservation, and salinity intrusion under the influence of sea level rise and delta subsidence. Modern research aims at unifying traditional harmonic tidal analysis, nonparametric regression techniques, and the existing understanding of tidal hydrodynamics to better predict and model tidal river dynamics both in single-thread channels and in branching channel networks. In this context, this review summarizes results from field observations and modeling studies set in tidal river environments as diverse as the Amazon in Brazil, the Columbia, Fraser and Saint Lawrence in North America, the Yangtze and Pearl in China, and the Berau and Mahakam in Indonesia. A description of state-of-the-art methods for a comprehensive analysis of water levels, wave propagation, discharges, and inundation extent in tidal rivers is provided. Implications for lowland river deltas are also discussed in terms of sedimentary deposits, channel bifurcation, avulsion, and salinity intrusion, addressing contemporary research challenges.

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Tidal river dynamics: Implications for deltas

Given the high numbers of deaths and the debilitating nature of diseases caused by the use of unclean water it is imperative that we have an understanding of the factors that control the dispersion of water borne pathogens and their respective indicators. This is all the more important in developing countries where significant proportions of the population often have little or no access to clean drinking water supplies. Moreover, and notwithstanding the importance of these bacteria in terms of public health, at present little work exists on the persistence, transfer and proliferation of these pathogens and their respective indicator organisms e.g. fecal indicator bacteria (FIB) such as Escherichia coli and fecal coliforms in humid tropical systems, such as are found in South East Asia or in the tropical regions of Africa. Both FIB and the waterborne pathogens they are supposed to indicate are particularly susceptible to shifts in water flow and quality and the predicted increases in rainfall and floods due to climate change will only exacerbate the problems of contamination. This will be furthermore compounded by the increasing urbanization and agricultural intensification that developing regions are experiencing. Therefore, recognizing and understanding the link between human activities, natural process and microbial functioning and their ultimate impacts on human health are prerequisites for reducing the risks to the exposed populations. Most of the existing work in tropical systems has been based on the application of temperate indicator organisms, models and mechanisms regardless of their applicability or appropriateness for tropical environments. Here we present a short review on the factors that control FIB dynamics in temperate systems and discuss their applicability to tropical environments. We then highlight some of the knowledge gaps in order to stimulate future research in this field in the tropics.

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A short review of fecal indicator bacteria in tropical aquatic ecosystems: knowledge gaps and future directions

A comparison study between 10 Mediterranean lagoons has been carried out by means of the 3-D numerical model SHYFEM. The investigated basins are the Venice and Marano-Grado lagoons in the Northern Adriatic Sea, the Lesina and Varano lagoons in the Southern Adriatic Sea, the Taranto basin in the Ionian Sea, the Cabras Lagoon in Sardinia, the Ganzirri and Faro lagoons in Sicily, the Mar Menor in Spain, and the Nador Lagoon in Morocco. This study has been focused on hydrodynamics in terms of exchange rates, transport time scale, and mixing. Water exchange depends mainly on the inlet shape and tidal range, but also on the wind regimes in the case of multi-inlet lagoons. Water renewal time, which is mostly determined by the exchange rate, is a powerful concept that allows lagoons to be characterized with a time scale. In the case of the studied lagoons, the renewal time ranged from few days in the Marano-Grado Lagoon up to 1 year in the case of the Mar Menor. The analysis of the renewal time frequency distribution allows identifying subbasins. The numerical study proved to be a useful tool for the intercomparison and classification of the lagoons. These environments range from a leaky type to a choked type of lagoons and give a representative picture of the lagoons situated around the Mediterranean basin. Mixing efficiency turns out to be a function of the morphological complexity, but also of the forcings acting on the system.

https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1002/2013JC009512

Comparative hydrodynamics of 10 Mediterranean lagoons by means of numerical modeling

River delta degradation has been caused by extraction of natural resources, sediment retention by reservoirs, and sea-level rise. Despite global concerns about these issues, human activity in the world’s largest deltas intensifies. Harbour development, construction of flood defences, sand mining and land reclamation emerge as key contemporary factors that exert an impact on delta morphology. Tides interacting with river discharge can play a crucial role in the morphodynamic development of deltas under pressure. Emerging insights into tidal controls on river delta morphology suggest that—despite the active morphodynamics in tidal channels and mouth bar regions—tidal motion acts to stabilize delta morphology at the landscape scale under the condition that sediment import during low flows largely balances sediment export during high flows. Distributary channels subject to tides show lower migration rates and are less easily flooded by the river because of opposing non-linear interactions between river discharge and the tide. These interactions lead to flow changes within channels, and a more uniform distribution of discharge across channels. Sediment depletion and rigorous human interventions in deltas, including storm surge defence works, disrupt the dynamic morphological equilibrium and can lead to erosion and severe scour at the channel bed, even decades after an intervention. River deltas are shaped by interactions between fluvial and tidal processes. Tides act to stabilize delta morphology, but sediment depletion due to human activities disrupts the balance and leads to erosion and scour.

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Tidal controls on river delta morphology

http://perso.uclouvain.be/vincent.legat/papers/2010-KarnaDeBryeGourgueLambrechtsComblenLegatDeleersnijder.pdf

A fully implicit wetting-drying method for DG-FEM shallow water models, with an application to the Scheldt Estuary

https://perso.uclouvain.be/sebastien.blaise/pdf/debrauwere2010.pdf

Residence time, exposure time and connectivity in the Scheldt Estuary

Bifurcations in tidally influenced deltas distribute river discharge over downstream channels, asserting a strong control over terrestrial runoff to the coastal ocean. Whereas the mechanics of river bifurcations is well-understood, junctions in tidal channels have received comparatively little attention in the literature. This paper aims to quantify the tidal impact on subtidal discharge distribution at the bifurcations in the Mahakam Delta, East Kalimantan, Indonesia. The Mahakam Delta is a regular fan-shaped delta, composed of a quasi-symmetric network of rectilinear distributaries and sinuous tidal channels. A depth-averaged version of the unstructured-mesh, finite-element model second-generation Louvain-la-Neuve Ice-ocean Model has been used to simulate the hydrodynamics driven by river discharge and tides in the delta channel network. The model was forced with tides at open sea boundaries and with measured and modeled river discharge at upstream locations. Calibration was performed with water level time series and flow measurements, both spanning a simulation period. Validation was performed by comparing the model results with discharge measurements at the two principal bifurcations in the delta. Results indicate that within 10 to 15 km from the delta apex, the tides alter the river discharge division by about 10% in all bifurcations. The tidal impact increases seaward, with a maximum value of the order of 30%. In general, the effect of tides is to hamper the discharge division that would occur in the case without tides.

http://www.vliz.be/imisdocs/publications/258383.pdf

Tidal impact on the division of river discharge over distributary channels in the Mahakam Delta

A finite-element, multi-scale model of the Scheldt tributaries, river, estuary and ROFI

http://www.vliz.be/imisdocs/publications/221873.pdf

Benjamin de Brye

Papers

A fully implicit wetting-drying method for DG-FEM shallow water models, with an application to the Scheldt Estuary

Residence time, exposure time and connectivity in the Scheldt Estuary

Tidal impact on the division of river discharge over distributary channels in the Mahakam Delta

A finite-element, multi-scale model of the Scheldt tributaries, river, estuary and ROFI

Modelling Escherichia coli concentrations in the tidal Scheldt river and estuary.