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Bentley Strockbine
Researcher at Stony Brook University
Publications - 4
Citations - 6867
Bentley Strockbine is an academic researcher from Stony Brook University. The author has contributed to research in topics: Molecular dynamics & Force field (chemistry). The author has an hindex of 4, co-authored 4 publications receiving 6222 citations. Previous affiliations of Bentley Strockbine include State University of New York System.
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Journal ArticleDOI
Comparison of multiple Amber force fields and development of improved protein backbone parameters.
Viktor Hornak,Robert Abel,Asim Okur,Bentley Strockbine,Adrian E. Roitberg,Carlos Simmerling,Carlos Simmerling +6 more
TL;DR: An effort to improve the φ/ψ dihedral terms in the ff99 energy function achieves a better balance of secondary structure elements as judged by improved distribution of backbone dihedrals for glycine and alanine with respect to PDB survey data.
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All-Atom Structure Prediction and Folding Simulations of a Stable Protein
TL;DR: Results are presented from all-atom, fully unrestrained ab initio folding simulations for a stable protein with nontrivial secondary structure elements and a hydrophobic core that is currently the smallest protein that displays two-state folding properties.
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Using PC clusters to evaluate the transferability of molecular mechanics force fields for proteins.
TL;DR: Structural behavior during molecular dynamics with the modified force field is found to be very similar to expectations, suggesting that these basis sets of conformations may themselves have significant transferability among force fields.
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Binding of antifusion peptides with HIVgp41 from molecular dynamics simulations: Quantitative correlation with experiment
TL;DR: The results show that differential association of C‐peptides with HIVgp41 is driven solely by changes within the conserved pocket supporting the hypothesis that this region is an important drug target site, and demonstrates good sensitivity of this computational method for simulating peptide fusion inhibitors.