Carla A. Cummins

TL;DR: Roary, a tool that rapidly builds large-scale pan genomes, identifying the core and accessory genes, is introduced, making construction of the pan genome of thousands of prokaryote samples possible on a standard desktop without compromising on the accuracy of results.

TL;DR: Roary is introduced, a tool that rapidly builds large-scale pan genomes, identifying the core and dispensable accessory genes and making construction of the pan genome of thousands of prokaryote samples possible on a standard desktop without compromising on the accuracy of results.

TL;DR: An optimized high-yield library preparation and sequencing protocol for TraDIS experiments and a novel software pipeline for analysis of the resulting data are described.

TL;DR: The European Nucleotide Archive (ENA) as discussed by the authors is an open and supported platform for the management, archiving, publication, and dissemination of data; and to the scientific community as a whole, it offers a globally comprehensive data set through a host of data discovery and retrieval tools.

TL;DR: In this paper , the authors proposed an analysis pipeline to discover genomic variations overlapping the target regions of commonly used PCR primer sets and provided the list of these mutations in a publicly available format based on a dataset of more than 1.2 million SARS-CoV-2 samples.