D
David F. Nieuwenhuijse
Researcher at Erasmus University Rotterdam
Publications - 34
Citations - 2786
David F. Nieuwenhuijse is an academic researcher from Erasmus University Rotterdam. The author has contributed to research in topics: Biology & Medicine. The author has an hindex of 14, co-authored 28 publications receiving 1406 citations. Previous affiliations of David F. Nieuwenhuijse include Erasmus University Medical Center.
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Journal ArticleDOI
Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans.
Bas B. Oude Munnink,Reina S. Sikkema,David F. Nieuwenhuijse,Robert Jan Molenaar,Emmanuelle Munger,Richard Molenkamp,Arco N. van der Spek,Paulien Tolsma,Ariene Rietveld,Miranda Brouwer,Noortje Bouwmeester-Vincken,Frank Harders,Renate Hakze-van der Honing,Marjolein C.A. Wegdam-Blans,Ruth Bouwstra,Corine H. GeurtsvanKessel,Annemiek A. van der Eijk,Francisca C. Velkers,Lidwien A.M. Smit,Arjan Stegeman,Wim H.M. van der Poel,Marion Koopmans +21 more
TL;DR: The SARS-CoV-2 virus was initially introduced by humans and has since evolved, most likely reflecting widespread circulation among mink in the beginning of the infection period, several weeks before detection.
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Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
Rene S. Hendriksen,Patrick Munk,Patrick Murigu Kamau Njage,Bram A. D. van Bunnik,Luke McNally,Oksana Lukjancenko,Timo Röder,David F. Nieuwenhuijse,Susanne Karlsmose Pedersen,Jette Kjeldgaard,Rolf Sommer Kaas,Philip Thomas Lanken Conradsen Clausen,Josef Korbinian Vogt,Pimlapas Leekitcharoenphon,Milou G.M. van de Schans,T. Zuidema,Ana Maria de Roda Husman,Simon Rasmussen,Bent O. Petersen,Clara Amid,Guy Cochrane,Thomas Sicheritz-Pontén,Heike Schmitt,Jorge Raul Matheu Alvarez,Awa Aidara-Kane,Sünje Johanna Pamp,Ole Lund,Tine Hald,Mark E. J. Woolhouse,Marion Koopmans,Håkan Vigre,Thomas Nordahl Petersen,Frank Møller Aarestrup +32 more
TL;DR: It is suggested that global AMR gene diversity and abundance vary by region, and that improving sanitation and health could potentially limit the global burden of AMR.
Journal ArticleDOI
Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands.
Bas B. Oude Munnink,David F. Nieuwenhuijse,Mart L. Stein,Áine O'Toole,Manon R. Haverkate,Madelief Mollers,Sandra K Kamga,Claudia M. E. Schapendonk,Mark Pronk,Pascal Lexmond,Anne van der Linden,Theo M. Bestebroer,Irina Chestakova,Ronald J. Overmars,Stefan van Nieuwkoop,Richard Molenkamp,Annemiek A. van der Eijk,Corine H. GeurtsvanKessel,Harry Vennema,Adam Meijer,Andrew Rambaut,Jaap T. van Dissel,Reina S. Sikkema,Aura Timen,Marion Koopmans +24 more
TL;DR: The combination of near to real-time whole-genome sequence analysis and epidemiology resulted in reliable assessments of the extent of SARS-CoV-2 transmission in the community, facilitating early decision-making to control local transmission of the virus in the Netherlands.
Journal ArticleDOI
COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study.
Reina S. Sikkema,Suzan D. Pas,David F. Nieuwenhuijse,Áine O'Toole,Jaco J. Verweij,Anne van der Linden,Irina Chestakova,Claudia M. E. Schapendonk,Mark Pronk,Pascal Lexmond,Theo M. Bestebroer,Ronald J. Overmars,Stefan van Nieuwkoop,Wouter van den Bijllaardt,Robbert G. Bentvelsen,Miranda van Rijen,Anton Buiting,Anne J.G. van Oudheusden,Bram M. W. Diederen,A.M.C. Bergmans,Annemiek A. van der Eijk,Richard Molenkamp,Andrew Rambaut,Aura Timen,Jan Kluytmans,Bas B. Oude Munnink,Marjolein Kluytmans– van den Bergh,Marion Koopmans +27 more
TL;DR: The data do not support widespread nosocomial transmission as the source of infection in patients or health-care workers, and the noted patterns were consistent with multiple introductions into the hospitals through community-acquired infections and local amplification in the community.
Journal ArticleDOI
Monitoring SARS-CoV-2 Circulation and Diversity through Community Wastewater Sequencing, the Netherlands and Belgium.
Ray Izquierdo-Lara,Goffe Elsinga,Leo Heijnen,Bas B. Oude Munnink,Claudia M. E. Schapendonk,David F. Nieuwenhuijse,Matthijs Kon,Lu Lu,Frank Møller Aarestrup,Samantha Lycett,Gertjan Medema,Marion Koopmans,Miranda de Graaf +12 more
TL;DR: In this paper, the authors used next-generation sequencing of sewage samples to evaluate the diversity of SARS-CoV-2 at the community level in the Netherlands and Belgium.