G
Guy Cochrane
Researcher at European Bioinformatics Institute
Publications - 119
Citations - 13580
Guy Cochrane is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: European Nucleotide Archive & Biology. The author has an hindex of 47, co-authored 101 publications receiving 10254 citations. Previous affiliations of Guy Cochrane include University of New Mexico & Wellcome Trust Sanger Institute.
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Journal ArticleDOI
The EMBL Nucleotide Sequence Database
Tamara Kulikova,Philippe Aldebert,Nicola Althorpe,Wendy Baker,Kirsty Bates,Paul Browne,Alexandra van den Broek,Guy Cochrane,Karyn Duggan,Ruth Y. Eberhardt,Nadeem Faruque,Maria Garcia-Pastor,Nicola Harte,Carola Kanz,Rasko Leinonen,Quan Lin,Vincent Lombard,Rodrigo Lopez,Renato Mancuso,Michelle McHale,Francesco Nardone,Ville Silventoinen,Peter Stoehr,Guenter Stoesser,Mary Ann Tuli,Katerina Tzouvara,Robert Vaughan,Dan Wu,Weimin Zhu,Rolf Apweiler +29 more
TL;DR: Changes over the past year include the removal of the sequence length limit, the launch of the EMBLCDSs dataset, extension of the Sequence Version Archive functionality and the revision of quality rules for TPA data.
Journal ArticleDOI
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Robert M. Bowers,Nikos C. Kyrpides,Ramunas Stepanauskas,Miranda Harmon-Smith,Devin F. R. Doud,T. B. K. Reddy,Frederik Schulz,Jessica K. Jarett,Adam R. Rivers,Adam R. Rivers,Emiley A. Eloe-Fadrosh,Susannah G. Tringe,Susannah G. Tringe,Natalia Ivanova,Alex Copeland,Alicia Clum,Eric D. Becraft,Rex R. Malmstrom,Bruce W. Birren,Mircea Podar,Peer Bork,George M. Weinstock,George M. Garrity,Jeremy A. Dodsworth,Shibu Yooseph,Granger G. Sutton,Frank Oliver Gloeckner,Jack A. Gilbert,William C. Nelson,Steven J. Hallam,Sean P. Jungbluth,Sean P. Jungbluth,Thijs J. G. Ettema,Scott Tighe,Konstantinos T. Konstantinidis,Wen Tso Liu,Brett J. Baker,Thomas Rattei,Jonathan A. Eisen,Brian P. Hedlund,Katherine D. McMahon,Noah Fierer,Rob Knight,Robert D. Finn,Guy Cochrane,Ilene Karsch-Mizrachi,Gene W. Tyson,Christian Rinke,Alla Lapidus,Folker Meyer,Pelin Yilmaz,Donovan H. Parks,A. M. Eren,Lynn M. Schriml,Jillian F. Banfield,Philip Hugenholtz,Tanja Woyke +56 more
TL;DR: Two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences are presented, including the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum information about a Metagenome-Assembled Genomes (MIMAG), including estimates of genome completeness and contamination.
Journal ArticleDOI
The minimum information about a genome sequence (MIGS) specification.
Dawn Field,George M. Garrity,Tanya Gray,Norman Morrison,Jeremy D. Selengut,Peter Sterk,Tatiana Tatusova,Nicholas R. Thomson,Michael J. Allen,Samuel V. Angiuoli,Michael Ashburner,Nelson Axelrod,Sandra L. Baldauf,S. Ballard,Jeffrey L. Boore,Guy Cochrane,James R. Cole,Peter Dawyndt,Paul De Vos,Claude W. dePamphilis,Robert Edwards,Nadeem Faruque,Robert G. Feldman,Jack A. Gilbert,Paul Gilna,Frank Oliver Glöckner,Philip Goldstein,Robert P. Guralnick,Daniel H. Haft,David Hancock,Henning Hermjakob,Christiane Hertz-Fowler,Phil Hugenholtz,Ian Joint,Leonid Kagan,Matthew D. Kane,Jessie Kennedy,George A. Kowalchuk,Renzo Kottmann,Eugene Kolker,Saul A. Kravitz,Nikos C. Kyrpides,Jim Leebens-Mack,Suzanna E. Lewis,Kelvin Li,Allyson L. Lister,Phillip Lord,Natalia Maltsev,Victor Markowitz,Jennifer B. H. Martiny,Barbara A. Methé,Ilene Mizrachi,Richard Moxon,Karen E. Nelson,Julian Parkhill,Lita M. Proctor,Owen White,Susanna-Assunta Sansone,Andrew J. Spiers,Robert Stevens,Paul Swift,Chris F. Taylor,Yoshio Tateno,Adrian Tett,Sarah L. Turner,David W. Ussery,Bob Vaughan,Naomi L. Ward,Trish Whetzel,Ingio San Gil,Gareth A. Wilson,Anil Wipat +71 more
TL;DR: Here, the minimum information about a genome sequence (MIGS) specification is introduced with the intent of promoting participation in its development and discussing the resources that will be required to develop improved mechanisms of metadata capture and exchange.
Journal ArticleDOI
The European Nucleotide Archive
Rasko Leinonen,Ruth Akhtar,Ewan Birney,Lawrence Bower,Ana Cerdeño-Tárraga,Ying Cheng,Iain Cleland,Nadeem Faruque,Neil Goodgame,Richard Gibson,Gemma Hoad,Mikyung Jang,Nima Pakseresht,Sheila Plaister,Rajesh Radhakrishnan,Kethi Reddy,Siamak Sobhany,Petra ten Hoopen,Robert Vaughan,Vadim Zalunin,Guy Cochrane +20 more
TL;DR: This article outlines these services and describes major changes and improvements introduced during 2010, including extended EMBL-Bank and SRA-data submission services, extended ENA Browser functionality, support for submitting data to the European Genome-phenome Archive (EGA) through SRA, and the launch of a new sequence similarity search service.
Journal ArticleDOI
The international nucleotide sequence database collaboration.
TL;DR: This article outlines INSDC services and update the reader on developments in 2011, including the newly launched BioProject database and improved handling of assembly information.