C
Chongyi Chen
Researcher at Harvard University
Publications - 9
Citations - 1234
Chongyi Chen is an academic researcher from Harvard University. The author has contributed to research in topics: DNA & Transposase. The author has an hindex of 7, co-authored 9 publications receiving 1011 citations. Previous affiliations of Chongyi Chen include National Institutes of Health & Peking University.
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Journal ArticleDOI
Mechanism of Transcriptional Bursting in Bacteria
TL;DR: It is shown that positive supercoiling buildup on a DNA segment by transcription slows down transcription elongation and eventually stops transcription initiation, and proves that transcriptional bursting of highly expressed genes in bacteria is primarily caused by reversible gyrase dissociation from and rebinding to aDNA segment, changing the supercoiled level of the segment.
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Chromosome organization by a nucleoid-associated protein in live bacteria
TL;DR: Super-resolution imaging in live Escherichia coli reveals protein clusters that sequester DNA loci and organize the chromosome, and demonstrates that H-NS plays a key role in global chromosome organization in bacteria.
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Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI)
Chongyi Chen,Dong Xing,Longzhi Tan,Heng Li,Guangyu Zhou,Lei Huang,Lei Huang,X. Sunney Xie,X. Sunney Xie +8 more
TL;DR: An improved single-cell WGA method, Linear Amplification via Transposon Insertion (LIANTI), is reported, which outperforms existing methods, enabling micro-CNV detection with kilobase resolution and direct observation of stochastic firing of DNA replication origins, which differs from cell to cell.
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Synthesizing a novel genetic sequential logic circuit: a push-on push-off switch
Chunbo Lou,Xili Liu,Ming Ni,Yiqi Huang,Qiushi Huang,Longwen Huang,Lingli Jiang,Dan Lu,Mingcong Wang,Chang Liu,Daizhuo Chen,Chongyi Chen,Xiaoyue Chen,Le Yang,Haisu Ma,Jianguo Chen,Qi Ouyang +16 more
TL;DR: The design and construction of a genetic sequential logic circuit in Escherichia coli that can generate different outputs in response to the same input signal on the basis of its internal state and ‘memorize’ the output is reported.
Journal ArticleDOI
Neuronal enhancers are hotspots for DNA single-strand break repair
Wei Wu,Sarah E. Hill,William J. Nathan,Jacob Paiano,Elsa Callen,Dongpeng Wang,Kenta Shinoda,Niek van Wietmarschen,Jennifer M. Colón-Mercado,Dali Zong,Raffaella De Pace,Han-Yu Shih,Steve Coon,Maia Parsadanian,Raphael Souza Pavani,Hana Hanzlikova,Hana Hanzlikova,Solji Park,Seol Kyoung Jung,Peter J. McHugh,Andres Canela,Chongyi Chen,Rafael Casellas,Keith W. Caldecott,Keith W. Caldecott,Michael E. Ward,André Nussenzweig +26 more
TL;DR: This article showed that post-mitotic neurons accumulate unexpectedly high levels of DNA single-strand breaks (SSBs) at specific sites within the genome, which are repaired by PARP1 and XRCC1-dependent mechanisms.