D
Damien M. de Vienne
Researcher at Lyon College
Publications - 62
Citations - 3321
Damien M. de Vienne is an academic researcher from Lyon College. The author has contributed to research in topics: Phylogenetic tree & Gene. The author has an hindex of 29, co-authored 57 publications receiving 2977 citations. Previous affiliations of Damien M. de Vienne include Agro ParisTech & Pompeu Fabra University.
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Journal ArticleDOI
Cospeciation vs host-shift speciation: methods for testing, evidence from natural associations and relation to coevolution
Damien M. de Vienne,Guislaine Refrégier,Guislaine Refrégier,Manuela López-Villavicencio,Aurélien Tellier,Michael E. Hood,Tatiana Giraud,Tatiana Giraud +7 more
TL;DR: Overall, there is now substantial evidence to suggest that coevolutionary dynamics of hosts and parasites do not favor long-term cospeciation, and approaches to compare divergence between pairwise associated groups of species, their advantages and pitfalls are outlined.
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Speciation in fungi
TL;DR: This review on fungal speciation first contrast the issues of species definition and species criteria and show that by distinguishing the two concepts the approaches to studying the speciation can be clarified.
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Quantitative trait loci underlying gene product variation: a novel perspective for analyzing regulation of genome expression.
TL;DR: A methodology to dissect the genetic architecture of quantitative variation of numerous gene products simultaneously might help understanding the architecture of regulatory networks and the possible adaptive or phenotypic significance of the polymorphism of the genes involved.
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Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes.
Pierre Gladieux,Pierre Gladieux,Pierre Gladieux,Jeanne Ropars,Jeanne Ropars,Hélène Badouin,Hélène Badouin,Antoine Branca,Antoine Branca,Gabriela Aguileta,Damien M. de Vienne,Damien M. de Vienne,Ricardo C. Rodríguez de la Vega,Ricardo C. Rodríguez de la Vega,Sara Branco,Tatiana Giraud,Tatiana Giraud +16 more
TL;DR: The various ecological sources of divergent selection and genomic changes are outlined, showing that gene loss and changes in gene expression and in genomic architecture are important adaptation processes, in addition to the more widely recognized processes of amino acid substitution and gene duplication.
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A congruence index for testing topological similarity between trees
TL;DR: An index, I(cong), is proposed for testing the topological congruence between trees with any number of leaves, based on maximum agreement subtrees (MAST), which is straightforward, simple to use, does not rely on parametrizing the likelihood of evolutionary events, and provides an associated confidence level.