D
Daniel Doppmeier
Researcher at Bielefeld University
Publications - 4
Citations - 695
Daniel Doppmeier is an academic researcher from Bielefeld University. The author has contributed to research in topics: Genome & Reference genome. The author has an hindex of 4, co-authored 4 publications receiving 656 citations. Previous affiliations of Daniel Doppmeier include University of Giessen.
Papers
More filters
Journal ArticleDOI
EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
Jochen Blom,Stefan P. Albaum,Daniel Doppmeier,Alfred Pühler,Frank-Jörg Vorhölter,Martha Zakrzewski,Alexander Goesmann +6 more
TL;DR: EDGAR provides novel analysis features and significantly simplifies the comparative analysis of related genomes and supports a quick survey of evolutionary relationships and simplifying the process of obtaining new biological insights into the differential gene content of kindred genomes.
Journal ArticleDOI
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
Matthias Hackl,Tobias Jakobi,Jochen Blom,Daniel Doppmeier,Karina Brinkrolf,Rafael Szczepanowski,Stephan H. Bernhart,Christian Höner zu Siederdissen,Juan A. Hernandez Bort,Matthias Wieser,Renate Kunert,Simon A. Jeffs,Ivo L. Hofacker,Alexander Goesmann,Alfred Pühler,Nicole Borth,Johannes Grillari +16 more
TL;DR: Deep-sequencing small RNA fractions of 6 biotechnologically relevant cell lines and cDNA sequencing of 26 validated targets of miR-17-92 suggests conserved functions for miRNAs in CHO cells, which together with the now publicly available sequence information sets the stage for developing novel RNAi tools for CHO cell engineering.
Journal ArticleDOI
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming
Jochen Blom,Tobias Jakobi,Daniel Doppmeier,Sebastian Jaenicke,Jörn Kalinowski,Jens Stoye,Alexander Goesmann +6 more
TL;DR: SARUMAN (Semiglobal Alignment of short Reads Using CUDA and NeedleMAN-Wunsch), a mapping approach that returns all possible alignment positions of a read in a reference sequence under a given error threshold, together with one optimal alignment for each of these positions.
Journal ArticleDOI
ReadXplorer—visualization and analysis of mapped sequences
Rolf Hilker,Kai Bernd Stadermann,Daniel Doppmeier,Jörn Kalinowski,Jens Stoye,Jasmin Straube,Jörn Winnebald,Alexander Goesmann +7 more
TL;DR: ReadXplorer is a software offering straightforward visualization and extensive analysis functions for genomic and transcriptomic DNA sequences mapped on a reference, which covers RNA secondary structure prediction, single nucleotide polymorphism and deletion–insertion polymorphism detection, genomic feature and general coverage analysis.