D
Dorothee Liebschner
Researcher at Lawrence Berkeley National Laboratory
Publications - 31
Citations - 4528
Dorothee Liebschner is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Protein structure & Hydrogen bond. The author has an hindex of 12, co-authored 26 publications receiving 2356 citations. Previous affiliations of Dorothee Liebschner include Nancy-Université & Argonne National Laboratory.
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Journal ArticleDOI
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
Dorothee Liebschner,Pavel V. Afonine,Matthew L. Baker,Gábor Bunkóczi,Vincent B. Chen,Tristan I. Croll,Bradley J. Hintze,Li-Wei Hung,Swati Jain,Airlie J. McCoy,Nigel W. Moriarty,Robert D. Oeffner,Billy K. Poon,Michael G. Prisant,Randy J. Read,Jane S. Richardson,David S. Richardson,Sammito,Oleg V. Sobolev,Duncan H. Stockwell,Thomas C. Terwilliger,Alexandre Urzhumtsev,Alexandre Urzhumtsev,Lizbeth L. Videau,Carmen J. Williams,Paul D. Adams,Paul D. Adams +26 more
TL;DR: Recent developments in the Phenix software package are described in the context of macromolecular structure determination using X-rays, neutrons and electrons.
Journal ArticleDOI
Polder maps: improving OMIT maps by excluding bulk solvent.
Dorothee Liebschner,Pavel V. Afonine,Nigel W. Moriarty,Billy K. Poon,Oleg V. Sobolev,Thomas C. Terwilliger,Paul D. Adams,Paul D. Adams +7 more
TL;DR: Residual OMIT maps can be improved by the selective exclusion of bulk solvent from the OMIT region.
Journal ArticleDOI
Structure of photosystem II and substrate binding at room temperature
Iris D. Young,Mohamed Ibrahim,Ruchira Chatterjee,Sheraz Gul,Franklin D. Fuller,Sergey Koroidov,Aaron S. Brewster,Rosalie Tran,Roberto Alonso-Mori,Thomas Kroll,Tara Michels-Clark,Hartawan Laksmono,Raymond G. Sierra,Claudiu A. Stan,Rana Hussein,Miao Zhang,Lacey Douthit,Markus Kubin,Casper de Lichtenberg,Long Vo Pham,Håkan Nilsson,Mun Hon Cheah,Dmitriy Shevela,Claudio Saracini,Mackenzie A. Bean,Ina Seuffert,Dimosthenis Sokaras,Tsu-Chien Weng,Ernest Pastor,Clemens Weninger,Thomas Fransson,Louise Lassalle,Philipp Bräuer,Pierre Aller,P. T. Docker,Babak Andi,Allen M. Orville,James M. Glownia,Silke Nelson,Marcin Sikorski,Diling Zhu,Mark S. Hunter,Thomas J. Lane,Andrew Aquila,Jason E. Koglin,Joseph Robinson,Mengning Liang,Sébastien Boutet,Artem Y. Lyubimov,Artem Y. Lyubimov,Monarin Uervirojnangkoorn,Monarin Uervirojnangkoorn,Nigel W. Moriarty,Dorothee Liebschner,Pavel V. Afonine,David G. Waterman,Gwyndaf Evans,Philippe Wernet,Holger Dobbek,William I. Weis,Axel T. Brunger,Petrus H. Zwart,Paul D. Adams,Paul D. Adams,Athina Zouni,Johannes Messinger,Johannes Messinger,Uwe Bergmann,Nicholas K. Sauter,Jan Kern,Jan Kern,Vittal K. Yachandra,Junko Yano +72 more
TL;DR: Ammonia, a water analogue, has been used as a marker, as it binds to the Mn4CaO5 cluster in the S2 and S3 states, and this approach, together with a comparison of the native dark and 2F states, is used to discriminate between proposed O–O bond formation mechanisms.
Journal ArticleDOI
An improved experimental databank of transferable multipolar atom models--ELMAM2. Construction details and applications.
Sławomir Domagała,Sławomir Domagała,Bertrand Fournier,Dorothee Liebschner,Benoit Guillot,Christian Jelsch +5 more
TL;DR: The deformation electron densities, electrostatic potentials and interaction energies calculated for several tripeptides and aromatic molecules are calculated using ELMam2 electron-density parameters and compared with the former ELMAM database and density functional theory calculations.
Journal ArticleDOI
On the reproducibility of protein crystal structures: five atomic resolution structures of trypsin.
TL;DR: Many details of a protein structure are reproducible or to what extent they might differ in models obtained from different crystals, however, several features of residues or ligands located in flexible parts of the macromolecule may vary significantly, such as side-chain orientations and the occupancies of certain fragments.