E
Eileen T. Dimalanta
Researcher at University of Wisconsin-Madison
Publications - 13
Citations - 2810
Eileen T. Dimalanta is an academic researcher from University of Wisconsin-Madison. The author has contributed to research in topics: Genome & Shotgun sequencing. The author has an hindex of 9, co-authored 10 publications receiving 2721 citations. Previous affiliations of Eileen T. Dimalanta include New York University.
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Journal ArticleDOI
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
Nicole T. Perna,Guy Plunkett,Valerie Burland,Bob Mau,Jeremy D. Glasner,Debra J. Rose,George F. Mayhew,Peter Evans,Jason Gregor,Heather A. Kirkpatrick,György Pósfai,Jeremiah D. Hackett,Sara A. Klink,Adam T. Boutin,Ying Shao,Leslie Miller,Erik J. Grotbeck,N. Wayne Davis,Alex Lim,Eileen T. Dimalanta,Konstantinos Potamousis,Jennifer Apodaca,Thomas Anantharaman,Jieyi Lin,Galex Yen,David C. Schwartz,Rodney A. Welch,Frederick R. Blattner +27 more
TL;DR: It is found that lateral gene transfer is far more extensive than previously anticipated and 1,387 new genes encoded in strain-specific clusters of diverse sizes were found in O157:H7, including candidate virulence factors, alternative metabolic capacities, several prophages and other new functions—all of which could be targets for surveillance.
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A microfluidic system for large DNA molecule arrays.
Eileen T. Dimalanta,Alex Lim,Rod Runnheim,Casey Lamers,Christopher Churas,Dan Forrest,Juan J. de Pablo,Michael D. Graham,Susan Coppersmith,Steve Goldstein,David C. Schwartz +10 more
TL;DR: The approach was to use replica molding to construct silastic devices to consistently deposit oriented, elongated DNA molecules onto charged surfaces, creating massive single molecule arrays, which were analyzed for both physical and biochemical insights within an integrated environment that created large data sets.
Journal ArticleDOI
DNA dynamics in a microchannel.
Richard M. Jendrejack,Eileen T. Dimalanta,David C. Schwartz,Michael D. Graham,Juan J. de Pablo +4 more
TL;DR: An extended Brownian dynamics simulation method is used to characterize the dynamics of long DNA molecules flowing in microchannels, finding that the relaxation time increases due to confinement in agreement with scaling predictions.
Journal ArticleDOI
Shotgun Optical Maps of the Whole Escherichia coli O157:H7 Genome
Alex Lim,Eileen T. Dimalanta,Konstantinos Potamousis,Galex Yen,Jennifer Apodoca,Chunhong Tao,Jieyi Lin,Rong Qi,Rong Qi,John Skiadas,John Skiadas,Arvind Ramanathan,Arvind Ramanathan,Nicole T. Perna,Guy Plunkett,Valerie Burland,Bob Mau,Jeremiah D. Hackett,Jeremiah D. Hackett,Frederick R. Blattner,Thomas Anantharaman,Bhubaneswar Mishra,David C. Schwartz +22 more
TL;DR: This work has constructed NheI and XhoI optical maps of Escherichia coli O157:H7 solely from genomic DNA molecules to provide a uniquely valuable scaffold for contig closure and sequence validation.
Journal ArticleDOI
A shotgun optical map of the entire Plasmodium falciparum genome
Zhongwu Lai,Junping Jing,Christopher Aston,Virginia Clarke,Jennifer Apodaca,Eileen T. Dimalanta,Daniel J. Carucci,Malcolm J. Gardner,Bud Mishra,Thomas Anantharaman,Salvatore Paxia,Stephen L. Hoffman,J. Craig Venter,Edward J. Huff,David C. Schwartz,David C. Schwartz +15 more
TL;DR: The Malaria Genome Consortium was formed to sequence and annotate the entire 24.6-Mb genome of the unicellular parasite Plasmodium falciparum.