E
Eoin L. Brodie
Researcher at Lawrence Berkeley National Laboratory
Publications - 227
Citations - 33887
Eoin L. Brodie is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Ecosystem & Soil water. The author has an hindex of 66, co-authored 207 publications receiving 28446 citations. Previous affiliations of Eoin L. Brodie include University College Dublin & University of California.
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Journal ArticleDOI
Thousands of small, novel genes predicted in global phage genomes.
Brayon J. Fremin,Ami S. Bhatt,Nikos C. Kyrpides,S. Sengupta,Alexander Sczyrba,Aline Maria da Silva,Alison Buchan,Amélie C. M. Gaudin,Andreas Brune,Ann M. Hirsch,A. Neumann,Ashley Shade,Axel Visel,Barbara Campbell,Brett J. Baker,Brian P. Hedlund,Byron C. Crump,Cameron Currie,Charlene N. Kelly,Christopher Craft,Christina Hazard,C. N. Francis,Christopher W. Schadt,Colin Averill,Courtney N. Mobilian,D. Buckley,D. Hunt,D Noguera,D. Beck,David L. Valentine,David A. Walsh,D.H. Sumner,Despoina S. Lymperopoulou,Devaki Bhaya,Donald A. Bryant,Elise Morrison,Eoin L. Brodie,Erica J. Young,Erik A. Lilleskov,Eva Högfors-Rönnholm,Feng Chen,F. Stewart,Graeme W. Nicol,Hanno Teeling,Harry R. Beller,C. Dionisi,Hui-Ling Liao,J. Michael Beman,James C. Stegen,James M. Tiedje,Janet K. Jansson,Jean S. VanderGheynst,Jeanette M. Norton,Jeffery L. Dangl,Jeffrey Blanchard,Jennifer Bowen,Jennifer L. Macalady,Jennifer Pett-Ridge,Jeremy C. Rich,Jérôme Payet,John D. Gladden,Jonathan D. Raff,Jonathan L. Klassen,Jonathan Tarn,Josh Neufeld,Kelly Gravuer,Kirsten H. Hofmockel,Ko-Hsuan Mandy Chen,Konstantinos T. Konstantinidis,Kristen M. DeAngelis,Laila P. Partida-Martinez,Laura Meredith,Ludmila Chistoserdova,Mary Ann Moran,Matthew Scarborough,Matthew O. Schrenk,Matthew Barry Sullivan,M. Soniia David,Michelle A. O’Malley,Mónica Medina,M.M. Habteselassie,Nicholas D. Ward,Nicole Pietrasiak,Olivia U. Mason,P. Sorensen,Paulina Estrada de los Santos,Petr Baldrian,Radha McKay,Rachel L. Simister,Ramunas Stepanauskas,Rebecca Neumann,Rex R. Malmstrom,Ricardo Cavicchioli,Robert Kelly,Roland Hatzenpichler,Roman Stocker,Rose Ann Cattolico,Ryan M. Ziels,Rytas Vilgalys,Sara E. Blumer-Schuette,Shaun Crowe,Simon le Roux,Steven J. Hallam,Steven B Lindow,Susan H. Brawley,Susannah G. Tringe,Tanja Woyke,Thea Whitman,Thomas S. Bianchi,Thomas Thomas Mock,Timothy Kevin Donohue,Timothy Yong James,Udaya C. Kalluri,Ulas Karaoz,Vincent J. Denef,Wen-Tso Liu,William Whitman,Yang Ouyang +117 more
TL;DR: This paper employed a large-scale comparative genomics approach to predict >40,000 small-gene families in ∼2.3 million phage genome contigs and found that small genes in phage genomes are approximately 3-fold more prevalent than in host prokaryotic genomes.
Journal ArticleDOI
A novel D-xylose isomerase from the gut of the wood feeding beetle Odontotaenius disjunctus efficiently expressed in Saccharomyces cerevisiae.
Paulo Silva,Javier A. Ceja-Navarro,Javier A. Ceja-Navarro,F. Azevedo,Ulas Karaoz,Eoin L. Brodie,Eoin L. Brodie,Björn Johansson +7 more
TL;DR: In this paper, the authors cloned a new d-xylose isomerase derived from microorganisms in the gut of the wood-feeding beetle Odontotaenius disjunctus.
Journal ArticleDOI
The Colorado East River Community Observatory Data Collection
Zarine Kakalia,Zarine Kakalia,Charuleka Varadharajan,Erek Alper,Eoin L. Brodie,Madison Burrus,Rosemary W.H. Carroll,D. S. Christianson,Wenming Dong,Valerie Hendrix,Matthew L. Henderson,Susan S. Hubbard,Douglas Johnson,Roelof Versteeg,Kenneth H. Williams,D. Agarwal +15 more
TL;DR: The U.S. Department of Energy's (DOE) Colorado East River Community Observatory (ER) was established in 2015 as a representative mountainous, snow-dominated watershed to study hydrobiogeochemical responses to hydrological perturbations in headwater systems as mentioned in this paper.
Journal ArticleDOI
Effect of Cover Crop on Carbon Distribution in Size and Density Separated Soil Aggregates
Michael V. Schaefer,N. A. Bogie,Daniel Rath,Alison Marklein,Abdi Garniwan,Thomas Haensel,Ying Lin,Claudia C. E. Avila,Peter S. Nico,Kate M. Scow,Eoin L. Brodie,William J. Riley,Marilyn L. Fogel,Asmeret Asefaw Berhe,Teamrat A. Ghezzehei,Sanjai J. Parikh,Marco Keiluweit,Samantha C. Ying +17 more
TL;DR: In this paper, the short-term effect of cover crop on organic carbon distribution and chemistry using a combination of bulk, isotopic, and spectroscopic analyses of size-and density-separated soil aggregates was evaluated.
Journal Article
Greengenes: Chimera-checked 16S rRNA gene database and workbench compatible in ARB
T. Z. Desantis,Philip Hugenholtz,Niels Larsen,M. Rojas,Eoin L. Brodie,Keith Keller,T. Huber,D. Dalevi,Ping Hu,Gary L. Andersen +9 more
TL;DR: There is incongruent taxonomic nomenclature among curators even at the phylum level, and environmental sequences were classified into 100 phylum-level lineages in the Archaea and Bacteria.