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Rex R. Malmstrom

Researcher at Joint Genome Institute

Publications -  90
Citations -  8368

Rex R. Malmstrom is an academic researcher from Joint Genome Institute. The author has contributed to research in topics: Metagenomics & Genome. The author has an hindex of 39, co-authored 76 publications receiving 6390 citations. Previous affiliations of Rex R. Malmstrom include Massachusetts Institute of Technology & University of Delaware.

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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Robert M. Bowers, +56 more
- 01 Jul 2018 - 
TL;DR: Two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences are presented, including the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum information about a Metagenome-Assembled Genomes (MIMAG), including estimates of genome completeness and contamination.
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Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus.

TL;DR: In this paper, the authors applied large-scale single-cell genomics to study populations of the globally abundant marine cyanobacterium Prochlorococcus and found that they are composed of hundreds of subpopulations with distinct "genomic backbones," each backbone consisting of a different set of core gene alleles linked to a small distinctive set of flexible genes.
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Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

TL;DR: The data indicated specific resource partitioning of DOM by different bacterial species, which results in a temporal succession of taxa, metabolic pathways, and chemical transformations associated with HMWDOM turnover, suggesting that coordinated, cooperative activities of a variety of bacterial “specialists” may be critical in the cycling of marine DOM, emphasizing the importance of microbial community dynamics in the global carbon cycle.
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Minimum information about an uncultivated virus genome (MIUVIG)

Simon Roux, +63 more
- 01 Jan 2019 - 
TL;DR: The MIUViG (Minimum Information about an Uncultivated Virus Genome) as mentioned in this paper standard was developed within the Genomic Standards Consortium framework and includes virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction.

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

TL;DR: Large-scale single-cell genomics is applied to study populations of the globally abundant marine cyanobacterium Prochlorococcus to show that they are composed of hundreds of subpopulations with distinct “genomic backbones,” each backbone consisting of a different set of core gene alleles linked to a small distinctive set of flexible genes.