F
Fabian Externbrink
Researcher at Leipzig University
Publications - 3
Citations - 3339
Fabian Externbrink is an academic researcher from Leipzig University. The author has contributed to research in topics: RefSeq & Nucleic acid. The author has an hindex of 3, co-authored 3 publications receiving 2418 citations.
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Journal ArticleDOI
MITOS: Improved de novo metazoan mitochondrial genome annotation
Matthias Bernt,Alexander Donath,Frank Jühling,Frank Jühling,Fabian Externbrink,Catherine Florentz,Guido Fritzsch,Joern Pütz,Martin Middendorf,Peter F. Stadler +9 more
TL;DR: The MITOS pipeline is designed to compute a consistent de novo annotation of the mitogenomic sequences and it is shown that the results of MITOS match RefSeq and MitoZoa in terms of annotation coverage and quality.
Book ChapterDOI
RNA Folding Algorithms with G-Quadruplexes
Ronny Lorenz,Stephan H. Bernhart,Fabian Externbrink,Jing Qin,Christian Höner zu Siederdissen,Fabian Amman,Ivo L. Hofacker,Peter F. Stadler +7 more
TL;DR: With preliminary energy parameters, it is found that the overwhelming majority of putative quadruplex-forming sequences in the human genome are likely to fold into canonical secondary structures instead.
Journal ArticleDOI
CEM-designer: design of custom expression microarrays in the post-ENCODE Era.
Christian Arnold,Fabian Externbrink,Jörg Hackermüller,Jörg Hackermüller,Jörg Hackermüller,Kristin Reiche,Kristin Reiche,Kristin Reiche +7 more
TL;DR: This work developed the web server CEM-Designer that facilitates microarray platform independent design of custom expression microarrays for complex transcriptomes and covers the collection and generation of a set of unique target sequences from different sources.