François Chevenet

TL;DR: The Phylogeny.fr platform transparently chains programs to automatically perform phylogenetic analyses and can also meet the needs of specialists; the first ones will find up-to-date tools chained in a phylogeny pipeline to analyze their data in a simple and robust way, while the specialists will be able to easily build and run sophisticated analyses.

TL;DR: TreeDyn is a tree visualization and annotation tool which includes tools for tree manipulation and annotation and uses meta-information through dynamic graphical operators or scripting to help analyses and annotations of single trees or tree collections.

TL;DR: PRODISTIN, a new computational method allowing the functional clustering of proteins on the basis of protein-protein interaction data, is described, which enabled it to classify 11% of the Saccharomyces cerevisiae proteome into several groups and to predict a cellular function for many otherwise uncharacterized proteins.

TL;DR: Novel biological entities named ‘interactomes’ are presented, and the bioinformatics tools developed to analyse the large protein–protein interaction networks they form, along with several new perspectives of the field are presented.

TL;DR: OHM (OligoHeatMap) is an online tool able to provide estimates of Tm for a set of oligomers and aSet of aligned sequences, not only as text files of complete results but also in a graphical way: Tm values are translated into colors and displayed as a heat map image, either stand alone or to be used by softwares such as TreeDyn to be included in a phylogenetic tree.