S
Stéphane Audic
Researcher at Centre national de la recherche scientifique
Publications - 65
Citations - 20897
Stéphane Audic is an academic researcher from Centre national de la recherche scientifique. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 48, co-authored 65 publications receiving 18369 citations. Previous affiliations of Stéphane Audic include Pierre-and-Marie-Curie University.
Papers
More filters
Journal ArticleDOI
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
Alexis Dereeper,Valentin Guignon,Guillaume Blanc,Stéphane Audic,S. Buffet,François Chevenet,Jean-François Dufayard,Stéphane Guindon,Vincent Lefort,Magali Lescot,Jean-Michel Claverie,Olivier Gascuel +11 more
TL;DR: The Phylogeny.fr platform transparently chains programs to automatically perform phylogenetic analyses and can also meet the needs of specialists; the first ones will find up-to-date tools chained in a phylogeny pipeline to analyze their data in a simple and robust way, while the specialists will be able to easily build and run sophisticated analyses.
Journal ArticleDOI
The Significance of Digital Gene Expression Profiles
TL;DR: The first systematic study on the influence of random fluctuations and sampling size on the reliability of transcript profiles generated routinely by partially sequencing thousands of randomly selected clones from relevant cDNA libraries is presented.
Journal ArticleDOI
Eukaryotic plankton diversity in the sunlit ocean
Colomban de Vargas,Colomban de Vargas,Stéphane Audic,Stéphane Audic,Nicolas Henry,Nicolas Henry,Johan Decelle,Johan Decelle,Frédéric Mahé,Frédéric Mahé,Frédéric Mahé,Ramiro Logares,Enrique Lara,Cédric Berney,Cédric Berney,Noan Le Bescot,Noan Le Bescot,Ian Probert,Ian Probert,Margaux Carmichael,Margaux Carmichael,Margaux Carmichael,Julie Poulain,Sarah Romac,Sarah Romac,Sébastien Colin,Sébastien Colin,Sébastien Colin,Jean-Marc Aury,Lucie Bittner,Samuel Chaffron,Samuel Chaffron,Micah Dunthorn,Stefan Engelen,Olga Flegontova,Olga Flegontova,Lionel Guidi,Lionel Guidi,Aleš Horák,Aleš Horák,Olivier Jaillon,Olivier Jaillon,Olivier Jaillon,Gipsi Lima-Mendez,Gipsi Lima-Mendez,Julius Lukeš,Julius Lukeš,Julius Lukeš,Shruti Malviya,Raphael Morard,Raphael Morard,Raphael Morard,Matthieu Mulot,Eleonora Scalco,Raffaele Siano,Flora Vincent,Flora Vincent,Adriana Zingone,Céline Dimier,Céline Dimier,Céline Dimier,Marc Picheral,Marc Picheral,Sarah Searson,Sarah Searson,Stefanie Kandels-Lewis,Tara Oceans Coordinators,Silvia G. Acinas,Peer Bork,Peer Bork,Chris Bowler,Gabriel Gorsky,Gabriel Gorsky,Nigel Grimsley,Nigel Grimsley,Pascal Hingamp,Daniele Iudicone,Fabrice Not,Fabrice Not,Hiroyuki Ogata,Stephane Pesant,Jeroen Raes,Jeroen Raes,Michael E. Sieracki,Michael E. Sieracki,Sabrina Speich,Sabrina Speich,Lars Stemmann,Lars Stemmann,Shinichi Sunagawa,Jean Weissenbach,Jean Weissenbach,Jean Weissenbach,Patrick Wincker,Patrick Wincker,Patrick Wincker,Eric Karsenti,Eric Karsenti +97 more
TL;DR: Diversity emerged at all taxonomic levels, both within the groups comprising the ~11,200 cataloged morphospecies of eukaryotic plankton and among twice as many other deep-branching lineages of unappreciated importance in plankton ecology studies.
Journal ArticleDOI
The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
Laure Guillou,Dipankar Bachar,Stéphane Audic,David Bass,Cédric Berney,Lucie Bittner,Christophe Boutte,Gaëtan Burgaud,Colomban de Vargas,Johan Decelle,Javier del Campo,John R. Dolan,Micah Dunthorn,Bente Edvardsen,Maria Holzmann,Wiebe H. C. F. Kooistra,Enrique Lara,Noan Le Bescot,Ramiro Logares,Frédéric Mahé,Ramon Massana,Marina Montresor,Raphael Morard,Fabrice Not,Jan Pawlowski,Ian Probert,Anne Laure Sauvadet,Raffaele Siano,Thorsten Stoeck,Daniel Vaulot,Pascal Zimmermann,Richard Christen +31 more
TL;DR: The presence of both rRNA and rDNA sequences, taking into account introns (crucial for eukaryotic sequences), a normalized eight terms ranked-taxonomy and updates of new GenBank releases were made possible by a long-term collaboration between experts in taxonomy and computer scientists.
Journal ArticleDOI
The 1.2-Megabase Genome Sequence of Mimivirus
Didier Raoult,Stéphane Audic,Catherine Robert,Chantal Abergel,Patricia Renesto,Hiroyuki Ogata,Bernard La Scola,Marie Suzan,Jean-Michel Claverie +8 more
TL;DR: The size and complexity of the Mimivirus genome challenge the established frontier between viruses and parasitic cellular organisms and this new sequence data might help shed a new light on the origin of DNA viruses and their role in the early evolution of eukaryotes.