Intensive soil fertilization with mineral fertilizers has led to several issues such as high cost, nitrate pollution and loss of soil carbon. Fertilization with organic matter such as compost therefore represents an alternative for sustainable agriculture. Traditional organic amendments such as manures, composts and sewage sludge have been extensively studied in the past. However, applications of biogas digestates and their impacts on the environment and human health are still unexplored. Recent articles report the agricultural potential and conflicting results of digestate performances. As a consequence, the effectiveness of digestate as organic amendment and fertilizer is still under debate. Here we review the legislative, chemical, agronomic and environmental literature on anaerobic digestates. We found that digestates can be considered as organic amendments or organic fertilizers, when properly handled and managed. Indeed we further show that anaerobic digestates have a higher potential to harm the environment and human health than undigested animal manures and slurries. The main points are the following: (1) Most solid digestates comply with the European organic matter minimal requirement for an organic amendment; (2) the fertilizer values of liquid digestates lie between those of livestock manures and inorganic fertilizers; (3) anaerobic digestates have higher NH3 emission potential than undigested animal manures and slurries and, consequently, pose a greater risk to the broad environment; (4) high Cu and Zn concentrations in digestates from co-digestion of pig and cattle slurry feedstock could jeopardize the sustainability of agricultural soils and (5) high Mn concentrations in digestates can induce Mn toxicity in agricultural soils, upon repeated applications.

/pdf/agricultural-benefits-and-environmental-risks-of-soil-tchjm9ygqa.pdf

Agricultural benefits and environmental risks of soil fertilization with anaerobic digestates: a review.

Proton-transfer reaction mass spectrometry (PTR-MS) is a technique developed almost exclusively for the detection of gaseous organic compounds in air. Volatile organic compounds (VOCs) in air have both natural and anthropogenic sources. Natural sources include the emission of organic gases by living objects, both plants and animals. A well-known example, which is discussed later in this review, is the emission of a variety of gaseous organic compounds in the breath of animals, which are released from both the digestive system and the lungs. Plants are major sources of organic gases, as is the decay of dead animal and plant matter. Subsequent photochemistry can add further compounds to the mixture. Consequently, even without contributions from humans, ambient air from the Earth’s atmosphere would consist of a complex mixture of VOCs.

Proton-transfer reaction mass spectrometry.

454 pyrosequencing analyses of bacterial and archaeal richness in 21 full‐scale biogas digesters

Nonpathogenic rhizobacteria can induce a systemic resistance in plants that is phenotypically similar to pathogen induced systemic acquired resistance Rhizobacteria mediated induced systemic resistance has been demonstrated against fungi,bacteria,and viruses in Arabidopis,bean,camation,cucumber,radish,tobacco and tomato under conditions in which the inducing bacteria and the challenging pathogen remained spatially separated Bacteria induce plants to produce the JA and ethylene to develop the ISR And ISR is effective under field conditions and offers a natural mechanism for biological control of plant disease

Systemic resistance induced by rhizosphere bacteria

Anaerobic digestion is the most successful bioenergy technology worldwide with, at its core, undefined microbial communities that have poorly understood dynamics. Here, we investigated the relationships of bacterial community structure (>400,000 16S rRNA gene sequences for 112 samples) with function (i.e., bioreactor performance) and environment (i.e., operating conditions) in a yearlong monthly time series of nine full-scale bioreactor facilities treating brewery wastewater (>20,000 measurements). Each of the nine facilities had a unique community structure with an unprecedented level of stability. Using machine learning, we identified a small subset of operational taxonomic units (OTUs; 145 out of 4,962), which predicted the location of the facility of origin for almost every sample (96.4% accuracy). Of these 145 OTUs, syntrophic bacteria were systematically overrepresented, demonstrating that syntrophs rebounded following disturbances. This indicates that resilience, rather than dynamic competition, played an important role in maintaining the necessary syntrophic populations. In addition, we explained the observed phylogenetic differences between all samples on the basis of a subset of environmental gradients (using constrained ordination) and found stronger relationships between community structure and its function rather than its environment. These relationships were strongest for two performance variables—methanogenic activity and substrate removal efficiency—both of which were also affected by microbial ecology because these variables were correlated with community evenness (at any given time) and variability in phylogenetic structure (over time), respectively. Thus, we quantified relationships between community structure and function, which opens the door to engineer communities with superior functions.

https://www.pnas.org/content/pnas/108/10/4158.full.pdf

Bacterial community structures are unique and resilient in full-scale bioenergy systems

Investigation into the effect of high concentrations of volatile fatty acids in anaerobic digestion on methanogenic communities.

Compost: its role, mechanism and impact on reducing soil-borne plant diseases.

High-throughput 454 pyrosequencing was applied to investigate differences in bacterial and fungal communities between replant and closely situated control non-replant (fallow) soils. The V1-V3 region of the bacterial 16S rRNA gene and the ITS1 region of fungi from the different soils were sequenced using 454 pyrosequencing (Titanium chemistry), and data were analysed using the MOTHUR pipeline. The bacterial phyla Proteobacteria, Actinobacteria and Acidobacteria dominated in both fallow and replant apple orchard soils, and community composition at both phylum and genus level did not significantly differ according to NP-MANOVA. The fungal phyla Ascomycota, Zygomycota and Basidiomycota were dominant, and communities also did not differ in composition at either phylum or genus level. High positive Pearson correlations with plant growth in a plant growth assay performed with apple rootstocks plantlets were detected for the bacterial genera Gp16 and Solirubrobacter (r: >0.82) and fungal genera Scutellinia, Penicillium, Lecythophora and Paecilomyces (r: >0.65). Strong negative correlations with plant growth were detected for the bacterial genera Chitinophaga and Hyphomicrobium (r: <−0.78) and the fungal genera Acremonium, Fusarium and Cylindrocarpon (r: <−0.81). Study findings are in part consistent with those of previous research, but also highlight associations between apple plants and certain microbial genera. The functional role of these genera in affecting soil health and fertility should be further investigated.

Rhizosphere bacteria and fungi associated with plant growth in soils of three replanted apple orchards

https://pub.epsilon.slu.se/11247/1/sundberg_et_al_140702.pdf

Effects of pH and microbial composition on odour in food waste composting.

Slaughterhouse wastes are a potential reservoir of bacterial, viral, prion and parasitic pathogens, capable of infecting both animals and humans. A quick, cost effective and safe disposal method is thus essential in order to reduce the risk of disease following animal slaughter. Different methods for the disposal of such wastes exist, including composting, anaerobic digestion (AD), alkaline hydrolysis (AH), rendering, incineration and burning. Composting is a disposal method that allows a recycling of the slaughterhouse waste nutrients back into the earth. The high fat and protein content of slaughterhouse wastes mean however, that such wastes are an excellent substrate for AD processes, resulting in both the disposal of wastes, a recycling of nutrients (soil amendment with sludge), and in methane production. Concerns exist as to whether AD and composting processes can inactivate pathogens. In contrast, AH is capable of the inactivation of almost all known microorganisms. This review was conducted in order to compare three different methods of slaughterhouse waste disposal, as regards to their ability to inactivate various microbial pathogens. The intention was to investigate whether AD could be used for waste disposal (either alone, or in combination with another process) such that both energy can be obtained and potentially hazardous materials be disposed of.

/pdf/treatment-alternatives-of-slaughterhouse-wastes-and-their-85vwtlt3fw.pdf

Ingrid H. Franke-Whittle

Papers

Investigation into the effect of high concentrations of volatile fatty acids in anaerobic digestion on methanogenic communities.

Compost: its role, mechanism and impact on reducing soil-borne plant diseases.

Rhizosphere bacteria and fungi associated with plant growth in soils of three replanted apple orchards

Effects of pH and microbial composition on odour in food waste composting.

Treatment alternatives of slaughterhouse wastes, and their effect on the inactivation of different pathogens: A review