J
Jared M. Bischof
Researcher at Northwestern University
Publications - 28
Citations - 1301
Jared M. Bischof is an academic researcher from Northwestern University. The author has contributed to research in topics: Gene & Promoter. The author has an hindex of 19, co-authored 28 publications receiving 1201 citations. Previous affiliations of Jared M. Bischof include Children's Memorial Hospital & University of Chicago.
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Journal ArticleDOI
The MG-RAST Metagenomics Database and Portal in 2015
Andreas Wilke,Jared M. Bischof,Jared M. Bischof,Wolfgang Gerlach,Wolfgang Gerlach,Elizabeth M. Glass,Elizabeth M. Glass,Travis Harrison,Travis Harrison,Kevin P. Keegan,Kevin P. Keegan,Tobias Paczian,Tobias Paczian,William L. Trimble,William L. Trimble,Saurabh Bagchi,Ananth Grama,Somali Chaterji,Folker Meyer,Folker Meyer +19 more
TL;DR: This work presents several examples integrating data and analyses from MG-RAST into popular third-party analysis tools or sequence alignment tools, and reports changes to the analysis workflow and the technologies used to scale the pipeline up to the required throughput levels.
Journal ArticleDOI
Identification of Differentially Expressed MicroRNAs in Osteosarcoma.
Rishi Lulla,Fabricio F. Costa,Jared M. Bischof,Pauline M. Chou,Maria de Fatima Bonaldo,Elio F. Vanin,Marcelo B. Soares +6 more
TL;DR: It is hypothesized that dysregulation of differentially expressed microRNAs may contribute to tumorigenesis and might also represent molecular biomarkers or targets for drug development in osteosarcoma.
Journal ArticleDOI
Identification of microRNAs as potential prognostic markers in ependymoma.
Fabricio F. Costa,Jared M. Bischof,Elio F. Vanin,Rishi Lulla,Rishi Lulla,Min Wang,Simone Treiger Sredni,Veena Rajaram,Maria de Fatima Bonaldo,Deli Wang,Stewart Goldman,Tadanori Tomita,Marcelo B. Soares +12 more
TL;DR: A cluster of miRNAs on human chromosome 14q32 that is associated with time to relapse, and miR-203 is an independent marker for relapse compared to the parameters that are currently used are identified.
Proceedings ArticleDOI
Skyport: container-based execution environment management for multi-cloud scientific workflows
Wolfgang Gerlach,Wei Tang,Kevin P. Keegan,Travis Harrison,Andreas Wilke,Jared M. Bischof,Mark D'Souza,Scott Devoid,Daniel E. Murphy-Olson,Narayan Desai,Folker Meyer +10 more
TL;DR: The Skyport data analysis platform that provides scalable workflow execution environments for scientific data in the cloud, Skyport greatly reduces the complexity associated with providing the environment necessary to execute complex workflows.
Journal ArticleDOI
Folic acid remodels chromatin on Hes1 and Neurog2 promoters during caudal neural tube development.
Shunsuke Ichi,Shunsuke Ichi,Fabricio F. Costa,Jared M. Bischof,Hiromichi Nakazaki,Hiromichi Nakazaki,Yueh Wei Shen,Vanda Boshnjaku,Saurabh Sharma,Barbara Mania-Farnell,David G. McLone,Tadanori Tomita,Marcelo B. Soares,Chandra S K Mayanil +13 more
TL;DR: One of the mechanisms by which folate may rescue the Sp−/− phenotype is by increasing the expression of KDM6B, which in turn decreases H3K27 methylation marks on Hes1 and Neurog2 promoters thereby affecting gene transcription.