J
Jayme Holmes
Researcher at University of New Mexico
Publications - 13
Citations - 1130
Jayme Holmes is an academic researcher from University of New Mexico. The author has contributed to research in topics: Computer science & Medicine. The author has an hindex of 7, co-authored 10 publications receiving 680 citations.
Papers
More filters
Journal ArticleDOI
Unexplored therapeutic opportunities in the human genome.
Tudor I. Oprea,Cristian Bologa,Søren Brunak,Allen Campbell,Gregory N. Gan,Anna Gaulton,Shawn M. Gomez,Rajarshi Guha,Anne Hersey,Jayme Holmes,Ajit Jadhav,Lars Juhl Jensen,Gary L. Johnson,Anneli Karlson,Andrew R. Leach,Avi Ma'ayan,Anna Malovannaya,Subramani Mani,Stephen L. Mathias,Michael T. McManus,Terrence F. Meehan,Christian von Mering,Daniel Muthas,Dac-Trung Nguyen,John P. Overington,George Papadatos,George Papadatos,Jun Qin,Christian Reich,Bryan L. Roth,Stephan C. Schürer,Anton Simeonov,Larry A. Sklar,Noel Southall,Susumu Tomita,Ilinca Tudose,Ilinca Tudose,Oleg Ursu,Dusica Vidovic,Anna Waller,David Westergaard,Jeremy J. Yang,Gergely Zahoránszky-Köhalmi +42 more
TL;DR: How the systematic collection and processing of a wide array of genomic, proteomic, chemical and disease-related resource data by the IDG Knowledge Management Center have enabled the development of evidence-based criteria for tracking the target development level (TDL) of human proteins is discussed.
Journal ArticleDOI
Pharos: Collating protein information to shed light on the druggable genome
Dac-Trung Nguyen,Stephen L. Mathias,Cristian Bologa,Søren Brunak,Nicolas F. Fernandez,Anna Gaulton,Anne Hersey,Jayme Holmes,Lars Juhl Jensen,Anneli Karlsson,Guixia Liu,Guixia Liu,Avi Ma'ayan,Geetha Mandava,Subramani Mani,Saurabh Mehta,Saurabh Mehta,John P. Overington,Juhee Patel,Andrew D. Rouillard,Stephan C. Schürer,Timothy Sheils,Anton Simeonov,Larry A. Sklar,Noel Southall,Oleg Ursu,Dusica Vidovic,Anna Waller,Jeremy J. Yang,Ajit Jadhav,Tudor I. Oprea,Rajarshi Guha +31 more
TL;DR: Two resources developed by the IDG Knowledge Management Center are described: the Target Central Resource Database (TCRD) which collates many heterogeneous gene/protein datasets and Pharos (https://pharos.nih.gov), a multimodal web interface that presents the data from TCRD.
Journal ArticleDOI
DrugCentral: online drug compendium.
Oleg Ursu,Jayme Holmes,Jeffrey Knockel,Cristian Bologa,Jeremy J. Yang,Stephen L. Mathias,Stuart J. Nelson,Tudor I. Oprea +7 more
TL;DR: The integration with FDA drug labels enables text mining applications for drug adverse events and clinical trial information, and the overlap between DrugCentral FDA-approved drugs and their presence in four different chemical collections, are discussed.
Journal ArticleDOI
DrugCentral 2021 supports drug discovery and repositioning.
Sorin Avram,Cristian Bologa,Jayme Holmes,Giovanni Bocci,Thomas B Wilson,Dac-Trung Nguyen,Ramona Curpan,Liliana Halip,Alina Bora,Jeremy J. Yang,Jeffrey Knockel,Suman Sirimulla,Oleg Ursu,Tudor I. Oprea +13 more
TL;DR: The current release of DrugCentral includes 109 newly approved active pharmaceutical ingredients in the US, Europe, Japan and other countries; and two molecular entities of interest for COVID19, and incorporated REDIAL-2020, a machine learning platform that estimates anti-SARS-CoV-2 activities.
Journal ArticleDOI
DrugCentral 2018: an update
Oleg Ursu,Jayme Holmes,Cristian Bologa,Jeremy J. Yang,Stephen L. Mathias,Vasileios Stathias,Dac-Trung Nguyen,Stephan C. Schürer,Tudor I. Oprea +8 more
TL;DR: The following new data sources have been included: Food and Drug Administration (FDA) Adverse Event Reporting System (FAERS), FDA Orange Book information, L1000 gene perturbation profile distance/similarity matrices and estimated protonation constants.