J
Jia Gu
Researcher at Chinese Academy of Sciences
Publications - 58
Citations - 12620
Jia Gu is an academic researcher from Chinese Academy of Sciences. The author has contributed to research in topics: Image segmentation & Imaging phantom. The author has an hindex of 14, co-authored 58 publications receiving 3174 citations.
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Journal ArticleDOI
fastp: an ultra-fast all-in-one FASTQ preprocessor.
TL;DR: Fastp is developed as an ultra‐fast FASTQ preprocessor with useful quality control and data‐filtering features that can perform quality control, adapter trimming, quality filtering, per‐read quality pruning and many other operations with a single scan of the FAST Q data.
Posted ContentDOI
fastp: an ultra-fast all-in-one FASTQ preprocessor
TL;DR: Fastp is developed as an ultra-fast FASTQ preprocessor with useful quality control and data-filtering features that can perform quality control, adapter trimming, quality filtering, per-read quality cutting, and many other operations with a single scan of the FastQ data.
Journal ArticleDOI
AfterQC: automatic filtering, trimming, error removing and quality control for fastq data
TL;DR: Experimental results show that AfterQC can help to eliminate the sequencing errors for pair-end sequencing data to provide much cleaner outputs, and consequently help to reduce the false-positive variants, especially for the low-frequency somatic mutations.
Journal ArticleDOI
Superpixel-based and boundary-sensitive convolutional neural network for automated liver segmentation.
TL;DR: The proposed SBBS-CNN provides an accurate and effective tool for automated liver segmentation and showed superior performance in comparison with state-of-art methods, including U-Net, pixel-based CNN, active contour, level-sets and graph-cut algorithms.
Journal ArticleDOI
Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data.
TL;DR: This paper presents an efficient tool gencore, an ultra-fast, simple, little-weighted but powerful tool for duplicate removing and sequence error suppressing of NGS data, and is the only duplicate removing tool that generates both informative HTML and JSON reports.