J
Johannes Schindelin
Researcher at University of Wisconsin-Madison
Publications - 30
Citations - 59572
Johannes Schindelin is an academic researcher from University of Wisconsin-Madison. The author has contributed to research in topics: Image segmentation & Segmentation. The author has an hindex of 20, co-authored 30 publications receiving 43339 citations. Previous affiliations of Johannes Schindelin include Morgridge Institute for Research & Max Planck Society.
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Journal ArticleDOI
Fiji: an open-source platform for biological-image analysis
Johannes Schindelin,Ignacio Arganda-Carreras,Erwin Frise,Verena Kaynig,Mark Longair,Tobias Pietzsch,Stephan Preibisch,Curtis Rueden,Stephan Saalfeld,Benjamin Schmid,Jean-Yves Tinevez,Daniel J. White,Volker Hartenstein,Kevin W. Eliceiri,Pavel Tomancak,Albert Cardona +15 more
TL;DR: Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis that facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system.
Journal ArticleDOI
ImageJ2: ImageJ for the next generation of scientific image data
Curtis Rueden,Johannes Schindelin,Johannes Schindelin,Mark Hiner,Barry E. DeZonia,Alison E. Walter,Alison E. Walter,Ellen T. Arena,Ellen T. Arena,Kevin W. Eliceiri,Kevin W. Eliceiri +10 more
TL;DR: ImageJ2 as mentioned in this paper is the next generation of ImageJ, which provides a host of new functionality and separates concerns, fully decoupling the data model from the user interface.
Journal ArticleDOI
TrackMate: An open and extensible platform for single-particle tracking.
Jean-Yves Tinevez,Nick Perry,Johannes Schindelin,Genevieve M. Hoopes,Gregory D. Reynolds,Emmanuel Laplantine,Sebastian Y. Bednarek,Spencer L. Shorte,Kevin W. Eliceiri +8 more
TL;DR: TrackMate is an extensible platform where developers can easily write their own detection, particle linking, visualization or analysis algorithms within the TrackMate environment and is validated for quantitative lifetime analysis of clathrin-mediated endocytosis in plant cells.
Posted Content
ImageJ2: ImageJ for the next generation of scientific image data
Curtis Rueden,Johannes Schindelin,Johannes Schindelin,Mark Hiner,Barry E. DeZonia,Alison E. Walter,Alison E. Walter,Ellen T. Arena,Ellen T. Arena,Kevin W. Eliceiri,Kevin W. Eliceiri +10 more
TL;DR: The entire ImageJ codebase was rewrote, engineering a redesigned plugin mechanism intended to facilitate extensibility at every level, with the goal of creating a more powerful tool that continues to serve the existing community while addressing a wider range of scientific requirements.
Journal ArticleDOI
The ImageJ ecosystem: An open platform for biomedical image analysis
TL;DR: The ImageJ project is used as a case study of how open‐source software fosters its suites of software tools, making multitudes of image‐analysis technology easily accessible to the scientific community.