K
Kentaro Ihara
Researcher at KEK
Publications - 36
Citations - 1374
Kentaro Ihara is an academic researcher from KEK. The author has contributed to research in topics: GTPase & Guanine nucleotide exchange factor. The author has an hindex of 15, co-authored 31 publications receiving 1234 citations. Previous affiliations of Kentaro Ihara include Kyoto University & Nara Institute of Science and Technology.
Papers
More filters
Journal ArticleDOI
Crystal structure of human RhoA in a dominantly active form complexed with a GTP analogue.
Kentaro Ihara,Sachiko Muraguchi,Masato Kato,Toshiyuki Shimizu,Masahiro Shirakawa,Shinya Kuroda,Kozo Kaibuchi,Toshio Hakoshima +7 more
TL;DR: Structural differences of RhoA contains four insertion or deletion sites with an extra helical subdomain that seems to be characteristic of members of the Rho family, including Rac1, but with several variations in details provide an insight into specific interaction sites with the effectors, as well as with modulators such as guanine nucleotide exchange factor (GEF) and guanines nucleotide dissociation inhibitor (GDI).
Journal ArticleDOI
Grease matrix as a versatile carrier of proteins for serial crystallography.
Michihiro Sugahara,Eiichi Mizohata,Eriko Nango,Mamoru Suzuki,Tomoyuki Tanaka,Tetsuya Masuda,Rie Tanaka,Tatsuro Shimamura,Yoshiki Tanaka,Chiyo Suno,Kentaro Ihara,Dongqing Pan,Keisuke Kakinouchi,Shigeru Sugiyama,Michio Murata,Tsuyoshi Inoue,Kensuke Tono,Changyong Song,Jaehyun Park,Takashi Kameshima,Takaki Hatsui,Yasumasa Joti,Makina Yabashi,So Iwata +23 more
TL;DR: A grease-matrix carrier for protein microcrystals is introduced and the structures of lysozyme, glucose isomerase, thaumatin and fatty acid–binding protein type 3 are obtained under ambient conditions at a resolution of or finer than 2 Å.
Journal ArticleDOI
Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition.
Toshiyuki Shimizu,Atsuki Toumoto,Kentaro Ihara,Masato Shimizu,Yoshimasa Kyogoku,Nobuo Ogawa,Yasuji Oshima,Toshio Hakoshima +7 more
TL;DR: The crystal structure of a DNA‐binding domain of PHO4 complexed with DNA at 2.8 Å resolution revealed that the domain folds into a basic–helix–loop–helik (bHLH) motif with a long but compact loop that contains a short α‐helical segment.
Journal ArticleDOI
The structural basis of Rho effector recognition revealed by the crystal structure of human RhoA complexed with the effector domain of PKN/PRK1.
Ryoko Maesaki,Kentaro Ihara,Toshiyuki Shimizu,Shinya Kuroda,Shinya Kuroda,Kozo Kaibuchi,Toshio Hakoshima +6 more
TL;DR: The structure reveals the antiparallel coiled-coil finger (ACC finger) fold of the effector domain that binds to the Rho specificity-determining regions containing switch I, beta strands B2 and B3, and the C-terminal alpha helix A5, predominantly by specific hydrogen bonds.
Journal ArticleDOI
Structure of the ectodomain of Drosophila peptidoglycan-recognition protein LCa suggests a molecular mechanism for pattern recognition
Chung-I Chang,Kentaro Ihara,Yogarany Chelliah,Dominique Mengin-Lecreulx,Soichi Wakatsuki,Johann Deisenhofer +5 more
TL;DR: It is shown that association of the LCa and LCx ectodomains in vitro depends on monomeric peptidoglycan and that PGRP-LCa recognizes the exposed structural features of a monomersic muropeptide when the latter is bound to and presented by the ectododomain of PGRp-LCx.