M
Martin Goodson
Researcher at Wellcome Trust Centre for Human Genetics
Publications - 8
Citations - 3384
Martin Goodson is an academic researcher from Wellcome Trust Centre for Human Genetics. The author has contributed to research in topics: Genomics & Quantitative trait locus. The author has an hindex of 8, co-authored 8 publications receiving 3055 citations. Previous affiliations of Martin Goodson include University of Oxford.
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Journal ArticleDOI
Mouse genomic variation and its effect on phenotypes and gene regulation
Thomas M. Keane,Leo Goodstadt,Petr Danecek,Michael A. White,Kim Wong,Binnaz Yalcin,Andreas Heger,Avigail Agam,Avigail Agam,Guy Slater,Martin Goodson,Nick Furlotte,Eleazar Eskin,Christoffer Nellåker,Helen Whitley,James Cleak,Deborah Janowitz,Deborah Janowitz,Polinka Hernandez-Pliego,Andrew Edwards,T G Belgard,Peter L. Oliver,Rebecca E. McIntyre,Amarjit Bhomra,Jérôme Nicod,Xiangchao Gan,Wei Yuan,L van der Weyden,Charles A. Steward,Sendu Bala,Jim Stalker,Richard Mott,Richard Durbin,Ian J. Jackson,Anne Czechanski,José Afonso Guerra-Assunção,Leah Rae Donahue,Laura G. Reinholdt,Bret A. Payseur,Chris P. Ponting,Ewan Birney,Jonathan Flint,David J. Adams +42 more
TL;DR: These sequences provide a starting point for a new era in the functional analysis of a key model organism and show that the molecular nature of functional variants and their position relative to genes vary according to the effect size of the locus.
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Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads.
Gerton Lunter,Martin Goodson +1 more
TL;DR: A read mapper, Stampy, which uses a hybrid mapping algorithm and a detailed statistical model to achieve both speed and sensitivity, particularly when reads include sequence variation, which results in a higher useable sequence yield and improved accuracy compared to that of existing software.
Journal ArticleDOI
Sequence-based characterization of structural variation in the mouse genome.
Binnaz Yalcin,Kim Wong,Avigail Agam,Avigail Agam,Martin Goodson,Thomas M. Keane,Xiangchao Gan,Christoffer Nellåker,Leo Goodstadt,Jérôme Nicod,Amarjit Bhomra,Polinka Hernandez-Pliego,Helen Whitley,James Cleak,Rebekah Dutton,Deborah Janowitz,Deborah Janowitz,Richard Mott,David J. Adams,Jonathan Flint +19 more
TL;DR: It is inferred that insertion of retrotransposons causes more than half of SVs, and 24 SVs are identified that disrupt coding exons, acting as rare variants of large effect on gene function.
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GAT: a simulation framework for testing the association of genomic intervals
TL;DR: Genomic Association Test (GAT), a tool for estimating the significance of overlap between multiple sets of genomic intervals, implements a null model that the two sets of intervals are placed independently of one another, but allows each set’s density to depend on external variables, for example, isochore structure or chromosome identity.
Journal ArticleDOI
Commercially available outbred mice for genome-wide association studies.
Binnaz Yalcin,Jérôme Nicod,Amarjit Bhomra,Stuart Davidson,James Cleak,Laurent Farinelli,Magne Osteras,Adam Whitley,Wei Yuan,Xiangchao Gan,Martin Goodson,Paul Klenerman,Ansu Satpathy,Diane Mathis,Christophe Benoist,David J. Adams,Richard Mott,Jonathan Flint +17 more
TL;DR: Colonies' potential is demonstrated by identifying a deletion in the promoter of H2-Ea as the molecular change that strongly contributes to setting the ratio of CD4+ and CD8+ lymphocytes.