M
Michal Levy-Sakin
Researcher at University of California, San Francisco
Publications - 24
Citations - 1163
Michal Levy-Sakin is an academic researcher from University of California, San Francisco. The author has contributed to research in topics: Genome & Human genome. The author has an hindex of 13, co-authored 23 publications receiving 957 citations. Previous affiliations of Michal Levy-Sakin include Tel Aviv University.
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Journal ArticleDOI
A Hybrid Approach for de novo Human Genome Sequence Assembly and Phasing
Yulia Mostovoy,Michal Levy-Sakin,Jessica Lam,Ernest T. Lam,Alex Hastie,Patrick Marks,Joyce Lee,Catherine Chu,Chin Lin,Željko Džakula,Han Cao,Stephen A. Schlebusch,Kristina Giorda,Michael Schnall-Levin,Jeffrey D. Wall,Pui-Yan Kwok +15 more
TL;DR: This study describes an approach to performing de novo genome assembly and experimental phasing by integrating the data from Illumina short-read sequencing, 10X Genomics linked- read sequencing, and BioNano Genomics genome mapping to yield a high-quality, phased, de noVO assembled human genome.
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Complete Phenotypic Recovery of an Alzheimer's Disease Model by a Quinone-Tryptophan Hybrid Aggregation Inhibitor
Roni Scherzer-Attali,Riccardo Pellarin,Marino Convertino,Anat Frydman-Marom,Nirit Egoz-Matia,Sivan Peled,Michal Levy-Sakin,Deborah E. Shalev,Amedeo Caflisch,Ehud Gazit,Daniel L. Segal +10 more
TL;DR: 1,4-naphthoquinon-2-yl-L-tryptophan (NQTrp), a rationally designed inhibitor of the Alzheimer's disease-associated β-amyloid that combines the recognition capacities of both quinone and tryptophan moieties and completely inhibited Aβ oligomerization and fibrillization, as well as the cytotoxic effect of A β oligomers towards cultured neuronal cell line.
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Genome maps across 26 human populations reveal population-specific patterns of structural variation
Michal Levy-Sakin,Steven Pastor,Yulia Mostovoy,Le Li,Alden King-Yung Leung,Jennifer McCaffrey,Eleanor Young,Ernest T. Lam,Alex Hastie,Karen H. Y. Wong,Claire Yik Lok Chung,Walfred Ma,Justin Sibert,Ramakrishnan Rajagopalan,Nana Jin,Eugene Y. C. Chow,Catherine J. Chu,Annie Poon,Chin Lin,Ahmed Naguib,Wei-Ping Wang,Han Cao,Ting-Fung Chan,Kevin Y. Yip,Ming Xiao,Pui-Yan Kwok +25 more
TL;DR: Analyzing optical genome maps of 154 individuals from the 26 populations sequenced in the 1000 Genomes Project, it is found that phylogenetic population patterns of large SVs are similar to those of single nucleotide variations in 86% of the human genome, while ~2% ofThe genome has high structural complexity.
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Light-emitting self-assembled peptide nucleic acids exhibit both stacking interactions and Watson–Crick base pairing
Or Berger,Lihi Adler-Abramovich,Michal Levy-Sakin,Assaf Grunwald,Yael Liebes-Peer,Mor Bachar,Ludmila Buzhansky,Estelle Mossou,V. Trevor Forsyth,Tal Schwartz,Yuval Ebenstein,Felix Frolow,Linda J. W. Shimon,Fernando Patolsky,Ehud Gazit +14 more
TL;DR: This work explores the assembly of peptide nucleic acids (PNAs), which are short DNA mimics that have an amide backbone, and finds them to exhibit optical properties including voltage-dependent electroluminescence and wide-range excitation-dependent fluorescence in the visible region.
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Beyond sequencing: optical mapping of DNA in the age of nanotechnology and nanoscopy.
TL;DR: The advances of these methods in light of recent developments in nano-fabrication and super-resolution optical imaging are discussed and the latest achievements of optical mapping in the context of genomic analysis are reviewed.