H
Han Cao
Researcher at Princeton University
Publications - 62
Citations - 5102
Han Cao is an academic researcher from Princeton University. The author has contributed to research in topics: Genomics & Structural variation. The author has an hindex of 24, co-authored 62 publications receiving 4429 citations.
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Journal ArticleDOI
Multi-platform discovery of haplotype-resolved structural variation in human genomes
Mark Chaisson,Mark Chaisson,Ashley D. Sanders,Xuefang Zhao,Xuefang Zhao,Ankit Malhotra,David Porubsky,David Porubsky,Tobias Rausch,Eugene J. Gardner,Oscar L. Rodriguez,Li Guo,Ryan L. Collins,Xian Fan,Jia Wen,Robert E. Handsaker,Robert E. Handsaker,Susan Fairley,Zev N. Kronenberg,Xiangmeng Kong,Fereydoun Hormozdiari,Dillon Lee,Aaron M. Wenger,Alex Hastie,Danny Antaki,Thomas Anantharaman,Peter A. Audano,Harrison Brand,Stuart Cantsilieris,Han Cao,Eliza Cerveira,Chong Chen,Xintong Chen,Chen-Shan Chin,Zechen Chong,Nelson T. Chuang,Christine C. Lambert,Deanna M. Church,Laura Clarke,Andrew Farrell,Joey Flores,Timur R. Galeev,David U. Gorkin,David U. Gorkin,Madhusudan Gujral,Victor Guryev,William Haynes Heaton,Jonas Korlach,Sushant Kumar,Jee Young Kwon,Ernest T. Lam,Jong Eun Lee,Joyce V. Lee,Wan-Ping Lee,Sau Peng Lee,Shantao Li,Patrick Marks,Karine A. Viaud-Martinez,Sascha Meiers,Katherine M. Munson,Fabio C. P. Navarro,Bradley J. Nelson,Conor Nodzak,Amina Noor,Sofia Kyriazopoulou-Panagiotopoulou,Andy Wing Chun Pang,Yunjiang Qiu,Yunjiang Qiu,Gabriel Rosanio,Mallory Ryan,Adrian M. Stütz,Diana C.J. Spierings,Alistair Ward,Anne Marie E. Welch,Ming Xiao,Wei Xu,Chengsheng Zhang,Qihui Zhu,Xiangqun Zheng-Bradley,Ernesto Lowy,Sergei Yakneen,Steven A. McCarroll,Steven A. McCarroll,Goo Jun,Li Ding,Chong-Lek Koh,Bing Ren,Bing Ren,Paul Flicek,Ken Chen,Mark Gerstein,Pui-Yan Kwok,Peter M. Lansdorp,Peter M. Lansdorp,Peter M. Lansdorp,Gabor T. Marth,Jonathan Sebat,Xinghua Shi,Ali Bashir,Kai Ye,Scott E. Devine,Michael E. Talkowski,Michael E. Talkowski,Ryan E. Mills,Tobias Marschall,Jan O. Korbel,Evan E. Eichler,Charles Lee +107 more
TL;DR: A suite of long-read, short- read, strand-specific sequencing technologies, optical mapping, and variant discovery algorithms are applied to comprehensively analyze three trios to define the full spectrum of human genetic variation in a haplotype-resolved manner.
Journal ArticleDOI
The dynamics of genomic-length DNA molecules in 100-nm channels
Jonas O. Tegenfeldt,Christelle N. Prinz,Han Cao,Stephen Y. Chou,Walter Reisner,Robert Riehn,Yan Mei Wang,Edward C. Cox,James C. Sturm,Pascal Silberzan,Robert H. Austin +10 more
TL;DR: It is shown that genomic-length DNA molecules imaged in nanochannels have an extension along the channel that scales linearly with the contour length of the polymer, in agreement with the scaling arguments developed by de Gennes for self-avoiding confined polymers.
Journal ArticleDOI
The axolotl genome and the evolution of key tissue formation regulators
Sergej Nowoshilow,Sergej Nowoshilow,Sergej Nowoshilow,Siegfried Schloissnig,Ji-Feng Fei,Andreas Dahl,Andy Wing Chun Pang,Martin Pippel,Sylke Winkler,Alex Hastie,George R. Young,Juliana G. Roscito,Francisco Falcon,Dunja Knapp,Sean Powell,Alfredo Cruz,Han Cao,Bianca Habermann,Michael Hiller,Elly M. Tanaka,Elly M. Tanaka,Elly M. Tanaka,Eugene W. Myers +22 more
TL;DR: The sequencing and assembly of the 32-gigabase-pair axolotl genome is reported using an approach that combined long-read sequencing, optical mapping and development of a new genome assembler (MARVEL).
Journal ArticleDOI
Fabrication of 10 nm enclosed nanofluidic channels
Han Cao,Zhaoning Yu,Jian Wang,Jonas O. Tegenfeldt,Robert H. Austin,Erli Chen,Wei Wu,Stephen Y. Chou +7 more
TL;DR: In this article, the authors made uniform arrays of nanometer scale structures using nanoimprint lithography over large areas (100 mm wafers) and sealed the nanofluidic channels by techniques based on nonuniform deposition.
Journal ArticleDOI
Micro- and nanofluidics for DNA analysis
Jonas O. Tegenfeldt,Jonas O. Tegenfeldt,Christelle N. Prinz,Christelle N. Prinz,Han Cao,Richard Huang,Robert H. Austin,Stephen Y. Chou,Edward C. Cox,James C. Sturm +9 more
TL;DR: This paper gives a few examples from the literature and from the own research in the field of miniaturized chip-based devices for DNA analysis, including dielectrophoresis for purification of DNA, artificial gel structures for rapid DNA separation, and nanofluidic channels for direct visualization of single DNA molecules.