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Nicole B. Kingsley
Researcher at University of California, Davis
Publications - 12
Citations - 121
Nicole B. Kingsley is an academic researcher from University of California, Davis. The author has contributed to research in topics: Medicine & Genome. The author has an hindex of 3, co-authored 8 publications receiving 34 citations.
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Journal ArticleDOI
Prediction of histone post-translational modification patterns based on nascent transcription data
Zhong Wang,Alexandra G. Chivu,Lauren A. Choate,Edward J. Rice,Donald Miller,Tinyi Chu,Shao-Pei Chou,Nicole B. Kingsley,Jessica L. Petersen,Carrie J. Finno,Rebecca R. Bellone,Douglas F. Antczak,John T. Lis,Charles G. Danko +13 more
TL;DR: In this article , the authors examined the relationship between histone modifications and transcription using experimental perturbations combined with sensitive machine-learning tools and found that transcription is required for active histone modification.
Journal ArticleDOI
Functionally Annotating Regulatory Elements in the Equine Genome Using Histone Mark ChIP-Seq
Nicole B. Kingsley,Colin Kern,Catherine Creppe,Erin N. Hales,Huaijun Zhou,Ted Kalbfleisch,James N. MacLeod,Jessica L. Petersen,Carrie J. Finno,Rebecca R. Bellone +9 more
TL;DR: The histone marks identified in this study represent some of the first resources for tissue-specific regulation within the equine genome and can be used to advance equine studies investigating health, performance, reproduction, and other traits of economic interest in the horse.
Journal ArticleDOI
Risk factors for equine recurrent uveitis in a population of Appaloosa horses in western Canada
Lynne S. Sandmeyer,Nicole B. Kingsley,Cheryl Walder,Sheila Archer,Marina L. Leis,Rebecca R. Bellone,Bianca S. Bauer +6 more
TL;DR: Age, coat pattern, and genetics are major risk factors for the diagnosis and classification of ERU in the Appaloosa.
Posted ContentDOI
Accurate imputation of histone modifications using transcription
Zhong Wang,Alexandra G. Chivu,Lauren A. Choate,Edward J. Rice,Donald Miller,Tinyi Chu,Shao-Pei Chou,Nicole B. Kingsley,Jessica L Peterson,Carrie J. Finno,Rebecca R. Bellone,Douglas F. Antczak,Charles G. Danko +12 more
TL;DR: Using imputation as an interpretative tool uncovered cell-type specific differences in how the PRC2-dependent repressive mark, H3K27me3, corresponds to transcription, and revealed that transcription initiation requires both chromatin accessibility and an active chromatin environment demonstrating that initiation is less promiscuous than previously thought.
Journal ArticleDOI
Generation of a Biobank From Two Adult Thoroughbred Stallions for the Functional Annotation of Animal Genomes Initiative.
Callum G. Donnelly,Rebecca R. Bellone,Erin N. Hales,Annee Nguyen,Scott A. Katzman,Ghislaine A. Dujovne,Kelly E. Knickelbein,Felipe Avila,Theodore S. Kalbfleisch,Elena Giulotto,Nicole B. Kingsley,Jocelyn Tanaka,Elizabeth Esdaile,Sichong Peng,Anna R. Dahlgren,Anna M Fuller,Michael J. Mienaltowski,Terje Raudsepp,Verena K. Affolter,Jessica L. Petersen,Carrie J. Finno +20 more
TL;DR: In this paper, the authors used full thickness skin biopsies to isolate, culture and cryopreserve dermal fibroblasts from two adult Thoroughbred stallions.