C
Colin Kern
Researcher at University of California, Davis
Publications - 38
Citations - 959
Colin Kern is an academic researcher from University of California, Davis. The author has contributed to research in topics: Gene & Chromatin. The author has an hindex of 9, co-authored 32 publications receiving 554 citations. Previous affiliations of Colin Kern include University of California, San Diego & Earlham College.
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Journal ArticleDOI
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
Richard E. Green,Edward L. Braun,Joel Armstrong,Dent Earl,Ngan Nguyen,Glenn Hickey,Michael W. Vandewege,John St. John,Salvador Capella-Gutierrez,Todd A. Castoe,Todd A. Castoe,Colin Kern,Matthew K. Fujita,Juan C. Opazo,Jerzy Jurka,Kenji K. Kojima,Juan Caballero,Robert Hubley,Arian F.A. Smit,Roy N. Platt,Christine A. Lavoie,Meganathan P. Ramakodi,John W. Finger,Alexander Suh,Alexander Suh,Sally R. Isberg,Lee G. Miles,Amanda Y. Chong,Weerachai Jaratlerdsiri,Jaime Gongora,Chris Moran,Andrés Iriarte,John E. McCormack,Shane C. Burgess,Scott V. Edwards,Eric Lyons,Christina L. Williams,Matthew Breen,Jason T. Howard,Cathy R. Gresham,Daniel G. Peterson,Juergen Schmitz,David D. Pollock,David Haussler,David Haussler,Eric W. Triplett,Guojie Zhang,Naoki Irie,Erich D. Jarvis,Christopher A. Brochu,Carl J. Schmidt,Fiona M. McCarthy,Brant C. Faircloth,Brant C. Faircloth,Federico G. Hoffmann,Travis C. Glenn,Toni Gabaldón,Toni Gabaldón,Benedict Paten,David A. Ray,David A. Ray +60 more
TL;DR: An exceptionally slow rate of genome evolution within crocodilians at all levels is observed, consistent with a single underlying cause of a reduced rate of evolutionary change rather than intrinsic differences in base repair machinery.
Journal ArticleDOI
Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.
Colin Kern,Ying Wang,James L. Chitwood,Ian F Korf,Mary E. Delany,Hans H. Cheng,Juan F. Medrano,Alison L. Van Eenennaam,Catherine W. Ernst,Pablo J. Ross,Huaijun Zhou +10 more
TL;DR: While lncRNAs are less conserved than protein-coding genes, a set of positionally conserved lnc RNAs were identified among chickens, cattle, and pigs with potential functions related to chromatin structure and gene regulation.
Journal ArticleDOI
Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research
Colin Kern,Ying Wang,Xiaoqin Xu,Zhangyuan Pan,Michelle M. Halstead,Ganrea Chanthavixay,Perot Saelao,Susan Waters,Ruidong Xiang,Amanda J. Chamberlain,Ian F Korf,Mary E. Delany,Hans H. Cheng,Juan F. Medrano,Alison L. Van Eenennaam,Christopher K. Tuggle,Catherine W. Ernst,Paul Flicek,Gerald Quon,Pablo J. Ross,Huaijun Zhou +20 more
TL;DR: The Functional Annotation of Animal Genomes consortium was formed to collaboratively annotate the functional elements in animal genomes, starting with domesticated animals as mentioned in this paper, and a set of regulatory elements are functionally conserved independent of divergence between species, and tissue-specific transcription factor occupancy at regulatory elements and their predicted target genes are also conserved.
Journal ArticleDOI
CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains
Hui Huang,Quan Zhu,Adam Jussila,Adam Jussila,Yuanyuan Han,Bogdan Bintu,Colin Kern,Mattia Conte,Yanxiao Zhang,Simona Bianco,Andrea M. Chiariello,Miao Yu,Rong Hu,Melodi Tastemel,Ivan Juric,Ming Hu,Mario Nicodemi,Xiaowei Zhuang,Bing Ren +18 more
TL;DR: In this paper, the authors explore the sequence requirements of CCCTC-mediated transcriptional insulation using a sensitive insulator reporter in mouse embryonic stem cells and find that insulation potency depends on the number of CTCF-binding sites in tandem.
Journal ArticleDOI
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
Roy N. Platt,Michael W. Vandewege,Colin Kern,Carl J. Schmidt,Federico G. Hoffmann,David A. Ray,David A. Ray +6 more
TL;DR: It is observed that the timing of the DNA transposon expansion and the resulting introduction of novel p/miRNAs coincide with the rapid diversification of the family Vespertilionidae, and a mechanism for introducing functional genomic variation rapidly through the expansion ofDNA transposons that fits within the TE-thrust hypothesis is suggested.