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Philip Jones
Researcher at Wellcome Trust Sanger Institute
Publications - 38
Citations - 9706
Philip Jones is an academic researcher from Wellcome Trust Sanger Institute. The author has contributed to research in topics: Exome sequencing & Proteomics Standards Initiative. The author has an hindex of 21, co-authored 37 publications receiving 7845 citations. Previous affiliations of Philip Jones include Wellcome Trust & European Bioinformatics Institute.
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Journal ArticleDOI
InterProScan 5: genome-scale protein function classification
Philip Jones,David Binns,Hsin-Yu Chang,Matthew Fraser,Weizhong Li,Craig McAnulla,Hamish McWilliam,John Maslen,Alex L. Mitchell,Gift Nuka,Sebastien Pesseat,Antony F. Quinn,Amaia Sangrador-Vegas,Maxim Scheremetjew,Siew-Yit Yong,Rodrigo Lopez,Sarah Hunter +16 more
TL;DR: A new Java-based architecture for the widely used protein function prediction software package InterProScan is described, resulting in a flexible and stable system that is able to use both multiprocessor machines and/or conventional clusters to achieve scalable distributed data analysis.
Journal ArticleDOI
InterPro in 2011: new developments in the family and domain prediction database
Sarah Hunter,Philip Jones,Alex L. Mitchell,Rolf Apweiler,Teresa K. Attwood,Alex Bateman,Thomas E. Bernard,David Binns,Peer Bork,Sarah W. Burge,Edouard de Castro,Penny Coggill,Matthew Corbett,Ujjwal Das,Louise C. Daugherty,Lauranne Duquenne,Robert D. Finn,Matthew Fraser,Julian Gough,Daniel H. Haft,Nicolas Hulo,Daniel Kahn,Elizabeth Kelly,Ivica Letunic,David M. Lonsdale,Rodrigo Lopez,Martin Madera,John Maslen,Craig McAnulla,Jennifer McDowall,Conor McMenamin,Huaiyu Mi,Prudence Mutowo-Muellenet,Nicola Mulder,Darren A. Natale,Christine A. Orengo,Sebastien Pesseat,Marco Punta,Antony F. Quinn,Catherine Rivoire,Amaia Sangrador-Vegas,Jeremy D. Selengut,Christian J. A. Sigrist,Maxim Scheremetjew,John Tate,Manjulapramila Thimmajanarthanan,Paul Thomas,Cathy H. Wu,Corin Yeats,Siew Yit Yong +49 more
TL;DR: An overview of new developments in the InterPro database and its associated software since 2009 is given, including updates to database content, curation processes and Web and programmatic interfaces.
Journal ArticleDOI
Genetic diagnosis of developmental disorders in the DDD study: a scalable analysis of genome-wide research data
Caroline F. Wright,Tomas W Fitzgerald,Wendy D Jones,Stephen Clayton,Jeremy F. McRae,Margriet van Kogelenberg,Daniel A. King,Kirsty Ambridge,Daniel M Barrett,Tanya Bayzetinova,A. Paul Bevan,Eugene Bragin,Eleni A. Chatzimichali,Susan M. Gribble,Philip Jones,Netravathi Krishnappa,Laura E Mason,Ray Miller,Katherine I. Morley,Katherine I. Morley,Katherine I. Morley,Vijaya Parthiban,Elena Prigmore,Diana Rajan,Alejandro Sifrim,G. Jawahar Swaminathan,Adrian Tivey,Anna Middleton,Michael Parker,Nigel P. Carter,Jeffrey C. Barrett,Matthew E. Hurles,David R. FitzPatrick,Helen V. Firth,Helen V. Firth +34 more
TL;DR: In families with developmentally normal parents, whole exome sequencing of the child and both parents resulted in a 10-fold reduction in the number of potential causal variants that needed clinical evaluation compared to sequencing only the child.
Journal ArticleDOI
PRIDE: The proteomics identifications database
Lennart Martens,Henning Hermjakob,Philip Jones,Marcin Adamski,Chris F. Taylor,David J. States,Kris Gevaert,Joël Vandekerckhove,Rolf Apweiler +8 more
TL;DR: The proteomics identifications (PRIDE) database is proposed as a means to finally turn publicly available data into publicly accessible data and offers a web‐based query interface, a user‐friendly data upload facility, and a documented application programming interface for direct computational access.
Journal ArticleDOI
PRIDE: a public repository of protein and peptide identifications for the proteomics community
Philip Jones,Richard G. Côté,Lennart Martens,Antony F. Quinn,Chris F. Taylor,William Derache,Henning Hermjakob,Rolf Apweiler +7 more
TL;DR: PRIDE, the ‘PRoteomics IDEntifications database’ () is a database of protein and peptide identifications that have been described in the scientific literature that is encouraged to submit their identifications and spectra to PRIDE to support their manuscript submissions to proteomics journals.