S
Sarah W. Burge
Researcher at European Bioinformatics Institute
Publications - 20
Citations - 6426
Sarah W. Burge is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Rfam & Non-coding RNA. The author has an hindex of 14, co-authored 20 publications receiving 5794 citations. Previous affiliations of Sarah W. Burge include Wellcome Trust Sanger Institute & Howard Hughes Medical Institute.
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Journal ArticleDOI
Quadruplex DNA: sequence, topology and structure
TL;DR: This survey focuses on the folding and structural features on quadruplexes formed from telomeric and non-telomeric DNA sequences, and examines fundamental aspects of topology and the emerging relationships with sequence.
Journal ArticleDOI
InterPro in 2011: new developments in the family and domain prediction database
Sarah Hunter,Philip Jones,Alex L. Mitchell,Rolf Apweiler,Teresa K. Attwood,Alex Bateman,Thomas E. Bernard,David Binns,Peer Bork,Sarah W. Burge,Edouard de Castro,Penny Coggill,Matthew Corbett,Ujjwal Das,Louise C. Daugherty,Lauranne Duquenne,Robert D. Finn,Matthew Fraser,Julian Gough,Daniel H. Haft,Nicolas Hulo,Daniel Kahn,Elizabeth Kelly,Ivica Letunic,David M. Lonsdale,Rodrigo Lopez,Martin Madera,John Maslen,Craig McAnulla,Jennifer McDowall,Conor McMenamin,Huaiyu Mi,Prudence Mutowo-Muellenet,Nicola Mulder,Darren A. Natale,Christine A. Orengo,Sebastien Pesseat,Marco Punta,Antony F. Quinn,Catherine Rivoire,Amaia Sangrador-Vegas,Jeremy D. Selengut,Christian J. A. Sigrist,Maxim Scheremetjew,John Tate,Manjulapramila Thimmajanarthanan,Paul Thomas,Cathy H. Wu,Corin Yeats,Siew Yit Yong +49 more
TL;DR: An overview of new developments in the InterPro database and its associated software since 2009 is given, including updates to database content, curation processes and Web and programmatic interfaces.
Journal ArticleDOI
Rfam 12.0: updates to the RNA families database
Eric P. Nawrocki,Sarah W. Burge,Alex Bateman,Jennifer Daub,Ruth Y. Eberhardt,Sean R. Eddy,Evan Floden,Paul P. Gardner,Thomas A. Jones,John Tate,Robert D. Finn,Robert D. Finn +11 more
TL;DR: The upgrade of the authors' search pipeline to use Infernal 1.1 is described and improved homology detection ability is demonstrated by comparison with the previous version, and the new pipeline is easier for users to apply to their own data sets, and its ability to annotate RNAs in genomic and metagenomic data sets of various sizes is illustrated.
Journal ArticleDOI
Rfam 11.0: 10 years of RNA families
Sarah W. Burge,Jennifer Daub,Ruth Y. Eberhardt,John Tate,Lars Barquist,Eric P. Nawrocki,Sean R. Eddy,Paul P. Gardner,Alex Bateman +8 more
TL;DR: The Rfam database as mentioned in this paper is a collection of non-coding RNA families, primarily RNAs with a conserved RNA secondary structure, including both RNA genes and mRNA cis-regulatory elements.
Journal ArticleDOI
The BioMart community portal: an innovative alternative to large, centralized data repositories
Damian Smedley,Syed Haider,Steffen Durinck,Luca Pandini,Paolo Provero,Paolo Provero,James E. Allen,Olivier Arnaiz,Mohammad Awedh,Richard Baldock,Giulia Barbiera,Philippe Bardou,Tim Beck,Andrew Blake,Merideth Bonierbale,Anthony J. Brookes,Gabriele Bucci,Iwan Buetti,Sarah W. Burge,Cédric Cabau,Joseph W. Carlson,Claude Chelala,Charalambos Chrysostomou,Davide Cittaro,Olivier Collin,Raul Cordova,Rosalind J. Cutts,Erik Dassi,Alex Di Genova,Anis Djari,Anthony Esposito,Heather Estrella,Eduardo Eyras,Eduardo Eyras,Julio Fernandez-Banet,Simon A. Forbes,Robert C. Free,Takatomo Fujisawa,Emanuela Gadaleta,Jose Manuel Garcia-Manteiga,David Goodstein,Kristian Gray,José Afonso Guerra-Assunção,Bernard Haggarty,Dong Jin Han,Byung Woo Han,Todd W. Harris,Jayson Harshbarger,Robert K. Hastings,Richard D. Hayes,Claire Hoede,Shen Hu,Zhi-Liang Hu,Lucie N. Hutchins,Zhengyan Kan,Hideya Kawaji,Aminah Keliet,Arnaud Kerhornou,Sunghoon Kim,Rhoda Kinsella,Christophe Klopp,Lei Kong,Daniel Lawson,Dejan Lazarevic,Ji Hyun Lee,Thomas Letellier,Chuan-Yun Li,Pietro Liò,Chu Jun Liu,Jie Luo,Alejandro Maass,Jérôme Mariette,Thomas Maurel,Stefania Merella,Azza M. Mohamed,François Moreews,Ibounyamine Nabihoudine,Nelson Ndegwa,Céline Noirot,Cristian Perez-Llamas,Michael Primig,Alessandro Quattrone,Hadi Quesneville,Davide Rambaldi,James M. Reecy,Michela Riba,Steven Rosanoff,Amna A. Saddiq,Elisa Salas,Olivier Sallou,Rebecca Shepherd,Reinhard Simon,Linda Sperling,William Spooner,Daniel M. Staines,Delphine Steinbach,Kevin R. Stone,Elia Stupka,Jon W. Teague,Abu Z. Dayem Ullah,Jun Wang,Doreen Ware,Marie Wong-Erasmus,Ken Youens-Clark,Amonida Zadissa,Shi Jian Zhang,Arek Kasprzyk,Arek Kasprzyk +107 more
TL;DR: The latest version of the BioMart Community Portal comes with many new databases that have been created by the ever-growing community and comes with better support and extensibility for data analysis and visualization tools.