P
Philip Zimmermann
Researcher at ETH Zurich
Publications - 42
Citations - 8592
Philip Zimmermann is an academic researcher from ETH Zurich. The author has contributed to research in topics: Gene & Gene expression profiling. The author has an hindex of 22, co-authored 41 publications receiving 8132 citations. Previous affiliations of Philip Zimmermann include École Polytechnique Fédérale de Lausanne.
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GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox
TL;DR: Genevestigator as mentioned in this paper is a web-browser interface for gene expression analysis using Affymetrix GeneChip data, which allows users to retrieve the expression patterns of individual genes throughout chosen environmental conditions, growth stages, or organs.
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Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes.
Tomas Hruz,Oliver Laule,Gabor Szabo,Frans Wessendorp,Stefan Bleuler,Lukas Oertle,Peter Widmayer,Wilhelm Gruissem,Philip Zimmermann +8 more
TL;DR: Genevestigator V3 is a novel meta-analysis system resulting from new algorithmic and software development using a client/server architecture, large-scale manual curation and quality control of microarray data for several organisms, and curation of pathway data for mouse and Arabidopsis.
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A systematic comparison and evaluation of biclustering methods for gene expression data
Amela Prelić,Stefan Bleuler,Philip Zimmermann,Anja Wille,Peter Bühlmann,Wilhelm Gruissem,Lars Hennig,Lothar Thiele,Eckart Zitzler +8 more
TL;DR: A methodology for comparing and validating biclustering methods that includes a simple binary reference model that captures the essential features of most bic Lustering approaches and proposes a fast divide-and-conquer algorithm (Bimax).
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Genome-Wide Analysis of Hydrogen Peroxide-Regulated Gene Expression in Arabidopsis Reveals a High Light-Induced Transcriptional Cluster Involved in Anthocyanin Biosynthesis
Sandy Vanderauwera,Philip Zimmermann,Stephane Rombauts,Steven Vandenabeele,Christian Langebartels,Wilhelm Gruissem,Dirk Inzé,Frank Van Breusegem +7 more
TL;DR: H2O2 was inferred to play a key role in the transcriptional up-regulation of small heat shock proteins during high light stress and a transcriptional cluster that was strongly and rapidly induced by high light in control plants, but impaired in catalase-deficient plants was identified.
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Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics
Katja Baerenfaller,Jonas Grossmann,Jonas Grossmann,Monica A. Grobei,Roger Hull,Matthias Hirsch-Hoffmann,Shaul Yalovsky,Philip Zimmermann,Ueli Grossniklaus,Wilhelm Gruissem,Wilhelm Gruissem,Sacha Baginsky,Sacha Baginsky +12 more
TL;DR: A proteome map for Arabidopsis thaliana is assembled from high-density, organ-specific proteome catalogs that were generated for different organs, developmental stages, and undifferentiated cultured cells and provides expression evidence for 57 gene models that are not represented in the TAIR7 protein database.