R
Reo Yoo
Researcher at University of California, San Diego
Publications - 7
Citations - 52
Reo Yoo is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Gene & Sulfolobus acidocaldarius. The author has an hindex of 3, co-authored 6 publications receiving 13 citations.
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Mining all publicly available expression data to compute dynamic microbial transcriptional regulatory networks
Anand V. Sastry,Saugat Poudel,Kevin Rychel,Reo Yoo,Cameron R. Lamoureux,Siddharth Chauhan,Zachary B. Haiman,Al Bulushi T,Yara Seif,Bernhard O. Palsson,Bernhard O. Palsson +10 more
TL;DR: In this paper, the authors introduce a workflow that converts all public gene expression data for a microbe into a dynamic representation of the organism's transcriptional regulatory network, which can be used to predict new regulons and analyze datasets in the context of all published data.
Journal ArticleDOI
Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius.
Siddharth Chauhan,Saugat Poudel,Kevin Rychel,Cameron R. Lamoureux,Reo Yoo,Tahani Al Bulushi,Yuan Yuan,Bernhard O. Palsson,Bernhard O. Palsson,Anand V. Sastry +9 more
TL;DR: In this article, independent component analysis was applied to 95 high-quality Sulfolobus acidocaldarius RNA-seq datasets and extract 45 independently modulated gene sets, or iModulons.
Posted ContentDOI
Machine learning of all Mycobacterium Tuberculosis H37Rv RNA-seq data reveals complex interplay between metabolism, stress response, and infection
Reo Yoo,Kevin Rychel,Saugat Poudel,Al-bulushi T,Yuan Yuan,Siddharth Chauhan,Cameron R. Lamoureux,Bernhard O. Palsson,Anand V. Sastry +8 more
TL;DR: In this paper, an unsupervised machine learning method was used to modularize the M. tuberculosis transcriptome and describe the role of transcription factors (TFs) in the regulatory network (TRN).
Posted ContentDOI
Synthesis of the novel transporter YdhC, is regulated by the YdhB transcription factor controlling adenosine and adenine uptake.
Irina A. Rodionova,Dmitry A. Rodionov,Ye Gao,Reo Yoo,Anand V. Sastry,Milton H. Saier,Bernhard O. Palsson +6 more
TL;DR: Evidence is provided that YdhB, (a novel LysR family regulator) activates expression of the ydhC gene, encoding a novel adenosine/adenine transporter in E. coli.