S
Stephen J. Callister
Researcher at Pacific Northwest National Laboratory
Publications - 57
Citations - 2240
Stephen J. Callister is an academic researcher from Pacific Northwest National Laboratory. The author has contributed to research in topics: Proteome & Soil water. The author has an hindex of 24, co-authored 57 publications receiving 1946 citations. Previous affiliations of Stephen J. Callister include Environmental Molecular Sciences Laboratory & Lawrence Berkeley National Laboratory.
Papers
More filters
Journal ArticleDOI
Normalization Approaches for Removing Systematic Biases Associated with Mass Spectrometry and Label-Free Proteomics
Stephen J. Callister,Richard C. Barry,Joshua N. Adkins,Ethan T. Johnson,Wei-Jun Qian,Bobbie-Jo M. Webb-Robertson,Richard D. Smith,Mary S. Lipton +7 more
TL;DR: Central tendency, linear regression, locally weighted regression, and quantile techniques were investigated for normalization of peptide abundance measurements obtained from high-throughput liquid chromatography-Fourier transform ion cyclotron resonance mass spectrometry (LC-FTICR MS).
Journal ArticleDOI
Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation
Michael J. Wilkins,Nathan C Verberkmoes,Kenneth H. Williams,Stephen J. Callister,Paula J. Mouser,Hila Elifantz,A. Lucie N'Guessan,Brian C. Thomas,Carrie D. Nicora,Manesh B Shah,Paul E. Abraham,Paul E. Abraham,Mary S. Lipton,Derek R. Lovley,Robert L. Hettich,Philip E. Long,Jillian F. Banfield,Jillian F. Banfield +17 more
TL;DR: A metagenomics-independent community proteogenomics can be used to diagnose the status of the subsurface consortia upon which remediation biotechnology relies.
Journal ArticleDOI
Differential Label-free Quantitative Proteomic Analysis of Shewanella oneidensis Cultured under Aerobic and Suboxic Conditions by Accurate Mass and Time Tag Approach *
Ruihua Fang,Dwayne A. Elias,Matthew E. Monroe,Yufeng Shen,Martin W. McIntosh,Pei Wang,Carrie D. Goddard,Stephen J. Callister,Ronald J. Moore,Yuri A. Gorby,Joshua N. Adkins,James K. Fredrickson,Mary S. Lipton,Richard D. Smith +13 more
TL;DR: The application of LC-MS without the use of stable isotope labeling for differential quantitative proteomic analysis of whole cell lysates of Shewanella oneidensis MR-1 cultured under aerobic and suboxic conditions is described.
Journal ArticleDOI
Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition
Yuliya V. Karpievitch,Thomas Taverner,Joshua N. Adkins,Stephen J. Callister,Gordon A. Anderson,Richard D. Smith,Alan R. Dabney +6 more
TL;DR: EigenMS is an adaptation of the surrogate variable analysis (SVA) algorithm of Leek and Storey, with the adaptations including a novel approach to preventing overfitting that facilitates the incorporation of EigenMS into an existing proteomics analysis pipeline.
Journal ArticleDOI
The future of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discovery
Thomas O. Metz,Qibin Zhang,Jason S. Page,Yufeng Shen,Stephen J. Callister,Jon M. Jacobs,Richard D. Smith +6 more
TL;DR: The future utility of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discover will be discussed, with emphasis on recent developments in high-efficiency LC separations, sensitive electrospray ionization approaches, and the benefits to incorporating both in LC-MS-based approaches.