Wim F. Vranken

TL;DR: The development of a set of software applications that use the Data Model and its associated libraries, thus validating the approach and providing a pipeline for high‐throughput analysis of NMR data.

TL;DR: ACPYPE is a tool that simplifies the automatic generation of topology and parameters in different formats for different molecular mechanics programmes, including calculation of partial charges, while being object oriented for integration with other applications.

TL;DR: It is shown that it is possible to obtain highly quantitative information about particularly important types of probability distributions, the populations of secondary structure elements (α-helix, β-strand, random coil, and polyproline II), by using the information provided by backbone chemical shifts.

TL;DR: The set of recalculated coordinates constitutes a unified database of protein structures in which potential user‐ and software‐dependent biases have been kept as small as possible and can be used by the structural biology community for further development of calculation protocols, validation tools, structure‐based statistical approaches and modeling.

TL;DR: The PDBe web pages that describe individual PDB entries have been enhanced through the introduction of plain-English summary pages and iconic representations of the contents of an entry (PDBprints); the entire web site has been redesigned to make it substantially easier to use for expert and novice users alike.