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Yan Ma
Researcher at University of California, Davis
Publications - 12
Citations - 2248
Yan Ma is an academic researcher from University of California, Davis. The author has contributed to research in topics: Chlamydomonas reinhardtii & Phase (matter). The author has an hindex of 10, co-authored 12 publications receiving 1425 citations.
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Journal ArticleDOI
MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis.
Hiroshi Tsugawa,Tomas Cajka,Tobias Kind,Yan Ma,Brendan T. Higgins,Kazutaka Ikeda,Mitsuhiro Kanazawa,Jean S. VanderGheynst,Oliver Fiehn,Masanori Arita +9 more
TL;DR: For a reversed-phase LC-MS/MS analysis of nine algal strains, MS-DIAL using an enriched LipidBlast library identified 1,023 lipid compounds, highlighting the chemotaxonomic relationships between theAlgal strains.
Journal ArticleDOI
Identification of small molecules using accurate mass MS/MS search.
Tobias Kind,Hiroshi Tsugawa,Tomas Cajka,Yan Ma,Zijuan Lai,Sajjan S. Mehta,Gert Wohlgemuth,Dinesh Kumar Barupal,Megan R. Showalter,Masanori Arita,Oliver Fiehn,Oliver Fiehn +11 more
TL;DR: Parameters that influence search results, such as mass accuracy, precursor ion isolation width, intensity thresholds, centroiding algorithms, and acquisition speed are critically discussed.
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MS2Analyzer: A Software for Small Molecule Substructure Annotations from Accurate Tandem Mass Spectra
TL;DR: MS2Analyzer was developed to enable user-defined searches of thousands of spectra for mass spectral features such as neutral losses, m/z differences, and product and precursor ions from MS/MS spectra in MSP/MGF files and has been successfully demonstrated for complex lipids in microalgae.
Journal ArticleDOI
An in silico MS/MS library for automatic annotation of novel FAHFA lipids
Yan Ma,Tobias Kind,Arpana Vaniya,Ingrid Gennity,Johannes F. Fahrmann,Oliver Fiehn,Oliver Fiehn +6 more
TL;DR: The new in silico MS/MS library allows users to annotate FAHFAs from accurate mass tandem mass spectra in an easy and fast manner with NIST MS Search or PepSearch software.
Journal ArticleDOI
Lipidomic Analysis of Chlamydomonas reinhardtii under Nitrogen and Sulfur Deprivation.
TL;DR: Homoserine-lipids were found up-regulated at late growth time points and higher cell density, while triacyclglycerols showed opposite regulation of unsaturated and saturated fatty acyl chains under nutritional deprivation.