M
Masanori Arita
Researcher at National Institute of Genetics
Publications - 166
Citations - 10834
Masanori Arita is an academic researcher from National Institute of Genetics. The author has contributed to research in topics: Metabolomics & Metabolome. The author has an hindex of 36, co-authored 156 publications receiving 8365 citations. Previous affiliations of Masanori Arita include Umeå University & University of Tokyo.
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Journal ArticleDOI
MassBank: a public repository for sharing mass spectral data for life sciences.
Hisayuki Horai,Masanori Arita,Masanori Arita,Shigehiko Kanaya,Yoshito Nihei,Tasuku Ikeda,Kazuhiro Suwa,Yuya Ojima,Kenichi Tanaka,Satoshi Tanaka,Ken Aoshima,Yoshiya Oda,Yuji Kakazu,Miyako Kusano,Takayuki Tohge,Fumio Matsuda,Yuji Sawada,Masami Yokota Hirai,Hiroki Nakanishi,Kazutaka Ikeda,Naoshige Akimoto,Takashi Maoka,Hiroki Takahashi,Takeshi Ara,Nozomu Sakurai,Hideyuki Suzuki,Daisuke Shibata,Steffen Neumann,Takashi Iida,Ken Tanaka,Kimito Funatsu,Fumito Matsuura,Tomoyoshi Soga,Ryo Taguchi,Kazuki Saito,Takaaki Nishioka +35 more
TL;DR: MassBank is the first public repository of mass spectra of small chemical compounds for life sciences and provides a merged spectrum for each compound prepared by merging the analyzed ESI-MS(2) data on an identical compound under different collision-induced dissociation conditions.
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MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis.
Hiroshi Tsugawa,Tomas Cajka,Tobias Kind,Yan Ma,Brendan T. Higgins,Kazutaka Ikeda,Mitsuhiro Kanazawa,Jean S. VanderGheynst,Oliver Fiehn,Masanori Arita +9 more
TL;DR: For a reversed-phase LC-MS/MS analysis of nine algal strains, MS-DIAL using an enriched LipidBlast library identified 1,023 lipid compounds, highlighting the chemotaxonomic relationships between theAlgal strains.
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Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana
Masami Yokota Hirai,Mitsuru Yano,Dayan B. Goodenowe,Shigehiko Kanaya,Tomoko Kimura,Motoko Awazuhara,Masanori Arita,Toru Fujiwara,Kazuki Saito +8 more
TL;DR: This is the first report of investigation for gene-to-metabolite networks regulating sulfur and nitrogen nutrition and secondary metabolism in Arabidopsis, with integration of metabolomics and transcriptomics, and specific responses to either sulfur or nitrogen deficiency were observed.
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Dynamic modeling of genetic networks using genetic algorithm and S-system
TL;DR: A unified extension of the basic method to predict not only the network structure but also its dynamics using a Genetic Algorithm and an S-system formalism is proposed and successfully inferred the dynamics of a small genetic network constructed with 60 parameters for 5 network variables and feedback loops using only time-course data of gene expression.
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Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software
Hiroshi Tsugawa,Tobias Kind,Ryo Nakabayashi,Daichi Yukihira,Wataru Tanaka,Tomas Cajka,Kazuki Saito,Oliver Fiehn,Oliver Fiehn,Masanori Arita,Masanori Arita +10 more
TL;DR: Nine rules of hydrogen rearrangement during bond cleavages in low-energy collision-induced dissociation (CID) are proposed based on the classic even-electron rule and cover heteroatoms and multistage fragmentation.