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A phylogeny of the genus Crocus (Iridaceae) based on sequence data from five plastid regions

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TLDR
The phylogenetic hypothesis is in conflict with the primary classification of Mathew into subgenera and sections, most notably by placing the highly morphologically deviant C. banaticus not as sister group to subgenus Crocus but imbedded within it.
Abstract
For the first time a phylogenetic analysis of the genus Crocus is presented. The phylogeny includes all but two of the currently 88 recognized species of the genus. The analysis is based on a total of 222 phylogenetically informative characters derived from nucleotide sequence data from three protein-coding (ndhF, accD, rpoC1) and two non-coding (trnH-pshA, rpl36-rps8) plastid regions. The phylogenetic hypothesis is in conflict with the primary classification of Mathew into subgenera and sections, most notably by placing the highly morphologically deviant C. banaticus (subgenus Crociris) not as sister group to subgenus Crocus but imbedded within it. The grouping of the taxa into series is better supported, though not entirely. Of the fifteen series recognized by Mathew, eight are confirmed as being monophyletic, monophyly of one more remains a possibility, and monophyly of a further two series is only violated by one taxon. Not unexpectedly, the two most species-rich groups, series Reticulati and series Biflori encompassing almost 1/3 of all species, are clearly non-monophyletic, but the present data do not satisfactorily solve their phylogenetic relationships.

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Citations
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How many loci does it take to DNA barcode a crocus

TL;DR: The time is ripe for selecting barcode regions in plants, and for prudent examination of their utility, and there is no reason for the plant community to hold back the barcoding effort by continued search for the Holy Grail.
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Phylogeny of Crocus (Iridaceae) based on one chloroplast and two nuclear loci: ancient hybridization and chromosome number evolution.

TL;DR: Phylogenetic analysis of ITS/trnL-F data resulted in a monophyletic genus Crocus, probably monophyletsic sections Crocus and Nudiscapus, and inferred monophyly for eight of the 15 series of the genus.
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In vitro antioxidant and metal chelating properties of corm, tepal and leaf from saffron (Crocus sativus L.)

TL;DR: In this article, several in vitro antioxidant methods, such as the β-carotene/linoleate model system, reducing power, DPPH and nitric oxide radical scavenging, and iron and copper ion chelation have been assayed on corm, tepal and leaf extracts.
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Phylogeny of the Asparagales based on three plastid and two mitochondrial genes.

TL;DR: Some deeper nodes in the Asparagales tree remain poorly resolved or unresolved as do the relationships of certain monogeneric families, whereas support for many families increases, and the increased support is dominated by plastid data.
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Crocus sativus L. genomics and different DNA barcode applications

TL;DR: By the application of the DNA barcode technique, different Crocus species genomes are analyzed and some aspects of the phylogeny of this genus are partially clarified and it is demonstrated that barcoding method, usually adopted for interspecific taxonomic identification, could be also applied to intraspecific and population studies.
References
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Journal ArticleDOI

Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae).

TL;DR: A refined hypothesis of species phylogeny of section Paeonia was proposed by considering the discordance between the nuclear and cpDNA phylogenies to be results of hybrid speciation followed by inheritance of cpDNA of one parent and fixation of ITS sequences of another parent.
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Molecular systematics of Iridaceae: evidence from four plastid DNA regions

TL;DR: In the combined tree, all subfamilies were resolved as monophyletic, except Nivenioidae that formed a grade in which Ixioideae were embedded, and this subfamily also lacks clear morphological synapomorphies and is highly heterogeneous, so it is difficult to develop a strong case on nonmolecular grounds for their monophyly.
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RAPD Analysis in Crocus sativus L. Accessions and Related Crocus Species

TL;DR: A Random Amplified Polymorphic DNA (RAPD) investigation was carried out on DNAs from five Crocus sativus and six closely related Crocus species to check whether cultivated saffron has maintained a constant genomic organisation and to clarify its relationships with possible ancestor species.
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Flower pigment composition of Crocus species and cultivars used for a chemotaxonomic investigation

TL;DR: The anthocyanin/flavonoid patterns of some of the taxa provide a valuable supplement to the taxonomy based on morphological and cytological patterns and should be further investigated using other methods, to evaluate their relations to other series.
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