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Proceedings ArticleDOI

Lossless Microarray Image Compression Based on Foreground Extraction

TLDR
In this paper, a new architecture for lossless compression of microarray images is offered, using a dedicated hardware for separation of foreground pixels from the background ones and using pipeline architecture.
Abstract
Microarray technology is a recent and powerful tool for concurrent monitoring of large number of genes expressions. Every microarray experiment produces hundreds of images. Each digital image requires a large storage space. Hence, real-time processing of these images and transmission of them necessitates efficient and custom-made lossless compression schemes. In this paper, we offer a new architecture for lossless compression of microarray images. In this architecture, we have used a dedicated hardware for separation of foreground pixels from the background ones. By separating these pixels and using pipeline architecture, a higher lossless compression ratio has been achieved as compared to other existing methods.

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Citations
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Patent

Method and apparatus for compressing imaging data of whole blood sample analyses

TL;DR: In this paper, a method and apparatus for analyzing white blood cells (WBCs) within a whole blood sample quiescently residing within a chamber is provided, defined by at least one transparent panel.
Proceedings ArticleDOI

A bio-inspired CNN with re-indexing engine for lossless DNA microarray compression and segmentation

TL;DR: An innovative method to compress the DNA image by re-organizing the signal data belonging to the background by making use of a novel way to apply the re-indexing techniques to almost “uncorrelated” signal is proposed.
Journal ArticleDOI

Real-time lossless compression of microarray images by separate compaction of foreground and background

TL;DR: A hardware scheme for lossless compression of 16-bit microarray images to separate foreground from background in images that such situation exist and could have application for most CT and digital x-ray images.
Patent

Method and apparatus for compressing imaging data of whole blood sample analyses

谢敏, +1 more
TL;DR: A method and apparatus for analyzing WBCs within a whole blood sample quiescently residing within a chamber is described in this article, where the chamber is defined by at least one transparent panel.
References
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Book

Principles of Genetics

TL;DR: In this article, the basic principles of inheritance of Mendelism and the Chromosomal Basis of Mendelsmosis are discussed. But they do not discuss the relationship between the number of chromosomes and the structure of the chromosomes.
Proceedings ArticleDOI

Lossless DNA microarray image compression

TL;DR: A new approach for lossless compression of DNA microarray images is proposed in this work, which not only outperforms ordinary compression engines, but also previous works in this area.
Proceedings ArticleDOI

Microarray BASICA: background adjustment, segmentation, image compression and analysis of microarray images

TL;DR: Experimental results show that BASICA can extract sufficiently accurate genetic information at bitrates as low as 43bpp and devise a coding scheme by modifying the object-based embedded block coding with optimized truncation algorithm to achieve optimal rate-distortion performance in lossy coding while still maintaining outstanding lossless compression performance.
Journal ArticleDOI

A Pipeline Architecture for Processing of DNA Microarrays Images

TL;DR: A pipeline architecture specifically designed for processing of DNA microarray images that is proved to be highly modular, scalable and suited for a Standard Cell VLSI implementation.
Proceedings ArticleDOI

Compression of cDNA and inkjet microarray images

TL;DR: A progressive compression scheme for microarray images which can be either lossy or lossless, with a coded data structure that allows fast decoding and reprocessing of image subsets, and includes summary statistics and image segmentation information.
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