Book ChapterDOI
Maximum Agreement Subtree (of 3 or More Trees)
Teresa M. Przytycka
- pp 1221-1224
TLDR
The maximum agreement subtree problem for k trees (k-MAST) as mentioned in this paper is a generalization of a similar problem for two trees (MAST), where a tuple of k rooted leaf-labeled trees (T1, T2 : : : Tk) is considered.Abstract:
The maximum agreement subtree problem for k trees (k-MAST) is a generalization of a similar problem for two trees (MAST). Consider a tuple of k rooted leaf-labeled trees (T1; T2 : : : Tk). Let A D fa1; a2; : : : ang be the set of leaf labels. Any subset B A uniquely determines the socalled topological restriction T jB of the three T to B . Namely, T jB is the topological subtree of T spanned by all leaves labeled with elements from B and the lowest common ancestors of all pairs of these leaves. In particular, the ancestor relation in T jB is defined so that it agrees with the ancestor relation in T . A subset B of A such T 1 jB; : : : ; T k jB are isomorphic is called an agreement set.read more
Citations
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Proceedings Article
An improved algorithm for the maximum agreement subtree problem (Conference)
TL;DR: In this paper, the maximum agreement subtree problem for a set T of k rooted, leaf-labeled evolutionary trees on n leaves where T contains a binary tree was solved in O(n/sup 2/log/sup k-1/n).
References
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Journal ArticleDOI
Obtaining common pruned trees
C. R. Finden,A. D. Gordon +1 more
TL;DR: The tree obtained by regrafting branches on to a largest common pruned tree is shown to contain all the classes present in the strict consensus tree.
Building trees, hunting for trees, and comparing trees : theory and methods in phylogenetic analysis
TL;DR: It is proved that there exist rules of every order that cannot be reduced to lower order rules, and several new NPcompleteness results and a list of standard NP-complete phylogenetic problems are discussed.
Journal ArticleDOI
Kaikoura tree theorems: computing the maximum agreement subtree
Mike Steel,Tandy Warnow +1 more
TL;DR: An O(n4.5 log n + V) algorithm to determine the largest agreement subtree of two trees on n leaves, where V is the maximum number of nodes in the trees.
Journal ArticleDOI
Maximum Agreement Subtree in a Set of Evolutionary Trees: Metrics and Efficient Algorithms
Amihood Amir,Dmitry Keselman +1 more
TL;DR: It is proved that the maximum homeomorphic agreement subtree problem is $\cal{NP}$-complete for three trees with unbounded degrees and an approximation algorithm of time O(kn5) for choosing the species that are not in a maximum agreement subtrees of a set of k trees is shown.
Journal ArticleDOI
An O ( n log n ) Algorithm for the Maximum Agreement Subtree Problem for Binary Trees
TL;DR: This work considers the case which occurs frequently in practice, i.e., the case when the trees are binary, and gives an O(nlog n) time algorithm for the maximum agreement subtree problem.
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