T
Tandy Warnow
Researcher at University of Illinois at Urbana–Champaign
Publications - 300
Citations - 19801
Tandy Warnow is an academic researcher from University of Illinois at Urbana–Champaign. The author has contributed to research in topics: Phylogenetic tree & Tree (data structure). The author has an hindex of 65, co-authored 275 publications receiving 16478 citations. Previous affiliations of Tandy Warnow include Sandia National Laboratories & Ohio State University.
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Journal ArticleDOI
Whole-genome analyses resolve early branches in the tree of life of modern birds
Erich D. Jarvis,Siavash Mirarab,Andre J. Aberer,Bo Li,Bo Li,Bo Li,Peter Houde,Cai Li,Cai Li,Simon Y. W. Ho,Brant C. Faircloth,Benoit Nabholz,Jason T. Howard,Alexander Suh,Claudia C. Weber,Rute R. da Fonseca,Jianwen Li,Fang Zhang Zhang,Hui Li,Long Zhou,Nitish Narula,Nitish Narula,Liang Liu,Ganesh Ganapathy,Bastien Boussau,Shamsuzzoha Bayzid,Volodymyr Zavidovych,Sankar Subramanian,Toni Gabaldón,Salvador Capella-Gutierrez,Jaime Huerta-Cepas,Bhanu Rekepalli,Bhanu Rekepalli,Kasper Munch,Mikkel H. Schierup,Bent E. K. Lindow,Wesley C. Warren,David A. Ray,Richard E. Green,Michael William Bruford,Xiangjiang Zhan,Xiangjiang Zhan,Andrew Dixon,Shengbin Li,Ning Li,Yinhua Huang,Elizabeth P. Derryberry,Elizabeth P. Derryberry,Mads F. Bertelsen,Frederick H. Sheldon,Robb T. Brumfield,Claudio V. Mello,Claudio V. Mello,Peter V. Lovell,Morgan Wirthlin,Maria Paula Cruz Schneider,Francisco Prosdocimi,José Alfredo Samaniego,Amhed Missael Vargas Velazquez,Alonzo Alfaro-Núñez,Paula F. Campos,Bent O. Petersen,Thomas Sicheritz-Pontén,An Pas,Thomas L. Bailey,R. Paul Scofield,Michael Bunce,David M. Lambert,Qi Zhou,Polina L. Perelman,Amy C. Driskell,Beth Shapiro,Zijun Xiong,Yongli Zeng,Shiping Liu,Zhenyu Li,Binghang Liu,Kui Wu,Jin Xiao,Xiong Yinqi,Quiemei Zheng,Yong Zhang,Huanming Yang,Jian Wang,Linnéa Smeds,Frank E. Rheindt,Michael J. Braun,Jon Fjeldså,Ludovic Orlando,F. Keith Barker,Knud A. Jønsson,Warren E. Johnson,Klaus-Peter Koepfli,Stephen J. O'Brien,David Haussler,Oliver A. Ryder,Carsten Rahbek,Eske Willerslev,Gary R. Graves,Gary R. Graves,Travis C. Glenn,John E. McCormack,Dave Burt,Hans Ellegren,Per Alström,Scott V. Edwards,Alexandros Stamatakis,David P. Mindell,Joel Cracraft,Edward L. Braun,Tandy Warnow,Tandy Warnow,Wang Jun,M. Thomas P. Gilbert,M. Thomas P. Gilbert,Guojie Zhang,Guojie Zhang +116 more
TL;DR: A genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves recovered a highly resolved tree that confirms previously controversial sister or close relationships and identifies the first divergence in Neoaves, two groups the authors named Passerea and Columbea.
Journal ArticleDOI
Phylotranscriptomic analysis of the origin and early diversification of land plants
Norman J. Wickett,Siavash Mirarab,Nam Nguyen,Tandy Warnow,Eric J. Carpenter,Naim Matasci,Saravanaraj Ayyampalayam,Michael S. Barker,J. Gordon Burleigh,Matthew A. Gitzendanner,Brad R. Ruhfel,Brad R. Ruhfel,Eric K. Wafula,Joshua P. Der,Sean W. Graham,Sarah Mathews,Michael Melkonian,Douglas E. Soltis,Douglas E. Soltis,Pamela S. Soltis,Pamela S. Soltis,Nicholas W. Miles,Carl J. Rothfels,Carl J. Rothfels,Lisa Pokorny,Lisa Pokorny,A. Jonathan Shaw,Lisa DeGironimo,Dennis W. Stevenson,Barbara Surek,Juan Carlos Villarreal,Béatrice Roure,Hervé Philippe,Hervé Philippe,Claude W. dePamphilis,Tao Chen,Michael K. Deyholos,Regina S. Baucom,Toni M. Kutchan,Megan M. Augustin,Jun Wang,Yong Zhang,Zhijian Tian,Zhixiang Yan,Xiaolei Wu,Xiao Sun,Gane Ka-Shu Wong,Jim Leebens-Mack +47 more
TL;DR: Strong and robust support is found for a sister-group relationship between land plants and one group of streptophyte green algae, the Zygnematophyceae, and suggests that phylogenetic hypotheses used to understand the evolution of fundamental plant traits should be reevaluated.
Journal ArticleDOI
ASTRAL: genome-scale coalescent-based species tree estimation
Siavash Mirarab,Rezwana Reaz,Md. Shamsuzzoha Bayzid,Théo Zimmermann,M. S. Swenson,Tandy Warnow +5 more
TL;DR: ASTRAL is a fast method for estimating species trees from multiple genes that is statistically consistent, can run on datasets with thousands of genes and has outstanding accuracy—improving on MP-EST and the population tree from BUCKy, two statistically consistent leading coalescent-based methods.
Journal ArticleDOI
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes.
Siavash Mirarab,Tandy Warnow +1 more
TL;DR: A new version of ASTRAL is presented, which is statistically consistent under the multi-species coalescent model and which is more accurate than other coalescent-based methods on the datasets the authors examined, and has substantially better accuracy under some conditions.
Journal ArticleDOI
Chemical phylogenetics of histone deacetylases
James E. Bradner,Nathan West,Nathan West,Melissa L. Grachan,Edward Greenberg,Edward Greenberg,Stephen J. Haggarty,Stephen J. Haggarty,Tandy Warnow,Ralph Mazitschek,Ralph Mazitschek +10 more
TL;DR: The synthesis and study of a focused library of cinnamic hydroxamates allowed the identification of a first non-selective HDAC inhibitor, which will guide a more informed use of HDAC inhibitors as chemical probes and therapeutic agents.