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Online control of the false discovery rate with decaying memory

TLDR
The generalized alpha-investing algorithm (GAI++) as mentioned in this paper improves the power of the entire class of GAI procedures under independence by awarding more alpha-wealth for each rejection, giving a near win-win resolution to a dilemma raised by Javanmard and Montanari.
Abstract
In the online multiple testing problem, p-values corresponding to different null hypotheses are presented one by one, and the decision of whether to reject a hypothesis must be made immediately, after which the next p-value is presented. Alpha-investing algorithms to control the false discovery rate were first formulated by Foster and Stine and have since been generalized and applied to various settings, varying from quality-preserving databases for science to multiple A/B tests for internet commerce. This paper improves the class of generalized alpha-investing algorithms (GAI) in four ways : (a) we show how to uniformly improve the power of the entire class of GAI procedures under independence by awarding more alpha-wealth for each rejection, giving a near win-win resolution to a dilemma raised by Javanmard and Montanari, (b) we demonstrate how to incorporate prior weights to indicate domain knowledge of which hypotheses are likely to be null or non-null, (c) we allow for differing penalties for false discoveries to indicate that some hypotheses may be more meaningful/important than others, (d) we define a new quantity called the \emph{decaying memory false discovery rate, or $\memfdr$} that may be more meaningful for applications with an explicit time component, using a discount factor to incrementally forget past decisions and alleviate some potential problems that we describe and name ``piggybacking'' and ``alpha-death''. Our GAI++ algorithms incorporate all four generalizations (a, b, c, d) simulatenously, and reduce to more powerful variants of earlier algorithms when the weights and decay are all set to unity.

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Simultaneous high-probability bounds on the false discovery proportion in structured, regression, and online settings

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SAFFRON: an adaptive algorithm for online control of the false discovery rate

TL;DR: SAFFRON as discussed by the authors is an adaptive algorithm for online false discovery rate (FDR) control, which is based on a novel estimate of the alpha fraction that it allocates to true null hypotheses.
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onlineFDR: an R package to control the false discovery rate for growing data repositories

TL;DR: An R package is presented, onlineFDR, which implements the first procedures that control the FDR for online hypothesis testing and provides wrapper functions to apply them to a historic dataset or a growing data repository.
References
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Journal ArticleDOI

Controlling the false discovery rate: a practical and powerful approach to multiple testing

TL;DR: In this paper, a different approach to problems of multiple significance testing is presented, which calls for controlling the expected proportion of falsely rejected hypotheses -the false discovery rate, which is equivalent to the FWER when all hypotheses are true but is smaller otherwise.
Journal ArticleDOI

False discovery control with p-value weighting

TL;DR: In this article, the authors present a method for multiple hypothesis testing that maintains control of the false discovery rate while incorporating prior information about the hypotheses, which takes the form of p-value weights.
Journal ArticleDOI

Multiple Hypotheses Testing with Weights

TL;DR: In this paper, a multiplicity of approaches and procedures for multiple testing problems with weights are discussed, for both the intersection hypothesis testing and the multiple hypotheses testing problems, and an optimal per family weighted error-rate controlling procedure is obtained.
Journal ArticleDOI

α-investing: a procedure for sequential control of expected false discoveries

TL;DR: In this article, it is shown that α-investing is an adaptive sequential methodology that encompasses a large family of procedures for testing multiple hypotheses, and α-Investing is shown to control mFDRR, which is the ratio of the expected number of false rejections to the expected value of the ratio.
Posted Content

Multiple testing with the structure adaptive Benjamini-Hochberg algorithm

TL;DR: The main theoretical result proves that the SABHA method controls the FDR at a level that is at most slightly higher than the target FDR level, as long as the adaptive weights are constrained sufficiently so as not to overfit too much to the data.
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