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Journal ArticleDOI

TREECON: A software package for the construction and drawing of evolutionary trees

Yves Van de Peer, +1 more
- 01 Apr 1993 - 
- Vol. 9, Iss: 2, pp 177-182
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TLDR
A package of programs (run by a management program called TREECON) was developed for the construction and drawing of evolutionary trees and the modules TREE, ROOT and DRAW are applicable to any kind of dissimilarity matrix.
Abstract
A package of programs (run by a management program called TREECON) was developed for the construction and drawing of evolutionary trees. The program MATRIX calculates dissimilarity values and can perform boostrap analysis on nucleic acid sequences. TREE implements different evolutionary tree constructing methods based on distance matrices. Because some of these methods produce unrooted evolutionary trees, a program ROOT places a root on the tree. Finally, the program DRAW draws the evolutionary tree, changes its size or topology, and produces drawings suitable for publication. Whereas, MATRIX is suited only for nucleic acids, the modules TREE, ROOT and DRAW are applicable to any kind of dissimilarity matrix. The programs run on IBM-compatible microcomputers using the DOS operating system.

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Genome-Wide Analysis of Core Cell Cycle Genes in Arabidopsis

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Phylogeny of Wolbachia in filarial nematodes

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A phylogenetic analysis of filarial nematodes: comparison with the phylogeny of Wolbachia endosymbionts

TL;DR: The phylogeny proposed by this study is partially incongruent with previous classifications of filarial nematodes, based on morphological characters and both traditional classifications and molecular phylogenies are, in part, inconsistent with the phylogeny of Wolbachia.
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Molecular Characterization of Subject-Specific Oral Microflora during Initial Colonization of Enamel

TL;DR: This study shows that the initial dental plaque community of each subject is unique in terms of diversity and composition, suggesting that the spatiotemporal interactions and ecological shifts that accompany biofilm maturation also occur in a subject-dependent manner.
Journal ArticleDOI

Genetic isolation by distance in Arabidopsis thaliana: biogeography and postglacial colonization of Europe

TL;DR: It appears that there has been sufficient historical recombination in the A. thaliana genome such that accessions do not conform to a tree‐like, bifurcating pattern of evolution – there is no ‘ecotype phylogeny’ Nonetheless, significant isolation by distance provides a framework upon which studies of natural variation in A.Thaliana may be designed and interpreted.
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