A
Abhinav Jain
Researcher at Institute of Genomics and Integrative Biology
Publications - 35
Citations - 510
Abhinav Jain is an academic researcher from Institute of Genomics and Integrative Biology. The author has contributed to research in topics: Population & Genetic epidemiology. The author has an hindex of 9, co-authored 35 publications receiving 235 citations. Previous affiliations of Abhinav Jain include Academy of Scientific and Innovative Research.
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Journal ArticleDOI
High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing.
Rahul C. Bhoyar,Abhinav Jain,Paras Sehgal,Mohit Kumar Divakar,Disha Sharma,Mohamed Imran,Bani Jolly,Gyan Ranjan,Mercy Rophina,Sumit Sharma,Sanjay Siwach,Kavita Pandhare,Swayamprabha Sahoo,Maheswata Sahoo,Ananya Nayak,Jatindra Nath Mohanty,Jayashankar Das,Sudhir Bhandari,Sandeep Kumar Mathur,Anshul Kumar,Rahul Sahlot,Pallavali Rojarani,Juturu Vijaya Lakshmi,A. Surekha,Pulala Chandra Sekhar,Shelly Mahajan,Shet Masih,Pawan K. Singh,Vipin Kumar,Blessy Jose,Vidur Mahajan,Vivek Gupta,Rakesh Gupta,Prabhakar Arumugam,Anjali Singh,Ananya Nandy,P V Ragavendran,Rakesh Mohan Jha,Anupama Kumari,Sheetal Gandotra,Vivek Rao,Mohammed Faruq,Sanjeev Kumar,G Betsy Reshma,G Narendra Varma,Shuvra Shekhar Roy,Antara Sengupta,Sabyasachi Chattopadhyay,Khushboo Singhal,Shalini Pradhan,Diksha Jha,Salwa Naushin,Saruchi Wadhwa,Nishu Tyagi,Mukta Poojary,Vinod Scaria,Sridhar Sivasubbu +56 more
TL;DR: In this article, the authors used the COVIDSeq protocol, which involves multiplex-PCR, barcoding, and sequencing of samples for high-throughput detection and deciphering the genetic epidemiology of SARS-CoV-2.
Posted ContentDOI
Tapestry: A Single-Round Smart Pooling Technique for COVID-19 Testing
Sabyasachi Ghosh,Ajit Rajwade,Srikar Krishna,Nikhil Gopalkrishnan,Nikhil Gopalkrishnan,Thomas E. Schaus,Anirudh Chakravarthy,Sriram Varahan,Vidhya Appu,Raunak Ramakrishnan,Shashank Ch,Mohit Jindal,Vadhir Bhupathi,Aditya Gupta,Abhinav Jain,Rishi Agarwal,Shreya Pathak,Mohammed Ali Rehan,Sarthak Consul,Yash Gupta,Nimay Gupta,Pratyush Agarwal,Ritika Goyal,Vinay Sagar,Uma Ramakrishnan,Sandeep Krishna,Peng Yin,Peng Yin,Dasaradhi Palakodeti,Manoj Gopalkrishnan +29 more
TL;DR: Tapestry, a novel quantitative nonadaptive pooling scheme to test many samples using only a few tests to identify the status of each individual sample with a single round of testing in fewer tests than simple two-round pooling.
Posted ContentDOI
High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next generation sequencing
Rahul C. Bhoyar,Abhinav Jain,Paras Sehgal,Mohit Kumar Divakar,Disha Sharma,Mohamed Imran,Bani Jolly,Gyan Ranjan,Mercy Rophina,Sumit Sharma,Sanjay Siwach,Kavita Pandhare,Swayamprabha Sahoo,Maheswata Sahoo,Ananya Nayak,Jatindra Nath Mohanty,Jayashankar Das,Sudhir Bhandari,Sandeep Kumar Mathur,Anshul Kumar,Rahul Sahlot,Pallavali Rojarani,Juturu Vijaya Lakshmi,Araveti Surekha,Pulala Chandra Sekhar,Shelly Mahajan,Shet Masih,Pawan K. Singh,Vipin Kumar,Blessy Jose,Vidur Mahajan,Vivek Gupta,Rakesh Gupta,Prabhakar Arumugam,Anjali Singh,Ananya Nandy,P.V. Raghavendran,Rakesh Mohan Jha,Anupama Kumari,Sheetal Gandotra,Vivek Rao,Mohammed Faruq,Sanjeev Kumar,G Betsy Reshma,G Narendra Varma,Shuvra Shekhar Roy,Antara Sengupta,Sabyasachi Chattopadhyay,Khushboo Singhal,Shalini Pradhan,Diksha Jha,Salwa Naushin,Saruchi Wadhwa,Nishu Tyagi,Mukta Poojary,Vinod Scaria,Sridhar Sivasubbu +56 more
TL;DR: The present study uses the COVIDSeq protocol, which involves multiplex-PCR, barcoding and sequencing of samples for high-throughput detection and deciphering the genetic epidemiology of SARS-CoV-2, and suggests that CO VIDSeq could be a potential high sensitivity assay for detection of Sars-Cov-2.
Journal ArticleDOI
Genomic survey of SARS-CoV-2 vaccine breakthrough infections in healthcare workers from Kerala, India.
Beena Philomina J,Bani Jolly,Neethu John,Rahul C. Bhoyar,Nisha Majeed,Vigneshwar Senthivel,Fairoz Cp,Mercy Rophina,Bindhu Vasudevan,Mohamed Imran,Prasanth Viswanathan,VR Arvinden,Anoop Joseph,Mohit Kumar Divakar,Priyanka Raveendranadhan Nair,Afra Shamnath,P Jayesh Kumar,Abhinav Jain,P Geetha,Anjali Bajaj,Samatha Mathew,Vishu Gupta,Srashti Jyoti Agrawal,Vinod Scaria,Sridhar Sivasubbu,Chandni Radhakrishnan +25 more
Journal ArticleDOI
IndiGenomes: a comprehensive resource of genetic variants from over 1000 Indian genomes.
Abhinav Jain,Abhinav Jain,Rahul C. Bhoyar,Kavita Pandhare,Anushree Mishra,Disha Sharma,Mohamed Imran,Mohamed Imran,Vigneshwar Senthivel,Vigneshwar Senthivel,Mohit Kumar Divakar,Mohit Kumar Divakar,Mercy Rophina,Mercy Rophina,Bani Jolly,Bani Jolly,Arushi Batra,Arushi Batra,Sumit Sharma,Sanjay Siwach,Arun G. Jadhao,Nikhil V. Palande,Ganga Nath Jha,Nishat Ashrafi,Prashant Kumar Mishra,A K Vidhya,S. Jain,Debasis Dash,Debasis Dash,Nachimuthu Senthil Kumar,Andrew Vanlallawma,Ranjan Jyoti Sarma,Lalchhandama Chhakchhuak,Shantaraman Kalyanaraman,Radha Mahadevan,Sunitha Kandasamy,B M Pabitha,Raskin Erusan Rajagopal,J Ezhil Ramya,P Nirmala Devi,Anjali Bajaj,Anjali Bajaj,Vishu Gupta,Vishu Gupta,Samatha Mathew,Samatha Mathew,Sangam Goswami,Sangam Goswami,Mohit Mangla,Mohit Mangla,Savinitha Prakash,Kandarp Joshi,Meyakumla,S Sreedevi,Devarshi U. Gajjar,Ronibala Soraisham,Rohit Yadav,Rohit Yadav,Yumnam Silla Devi,Aayush Gupta,Mitali Mukerji,Mitali Mukerji,Sivaprakash Ramalingam,Sivaprakash Ramalingam,B K Binukumar,B K Binukumar,Vinod Scaria,Vinod Scaria,Sridhar Sivasubbu,Sridhar Sivasubbu +69 more
TL;DR: This study generated a compendium of 55,898,122 single allelic genetic variants from geographically distinct Indian genomes and calculated the allele frequency, allele count, allele number, along with the number of heterozygous or homozygous individuals.