A
Amanda Warr
Researcher at University of Edinburgh
Publications - 17
Citations - 1329
Amanda Warr is an academic researcher from University of Edinburgh. The author has contributed to research in topics: Genome & Reference genome. The author has an hindex of 8, co-authored 15 publications receiving 861 citations.
Papers
More filters
Journal ArticleDOI
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
Robert D. Stewart,Marc D. Auffret,Amanda Warr,Andrew H. Wiser,Maximilian O. Press,Kyle W. Langford,Ivan Liachko,Timothy J. Snelling,Richard J. Dewhurst,Alan W. Walker,Rainer Roehe,Mick Watson +11 more
TL;DR: This dataset substantially improves the coverage of rumen microbial genomes in the public databases and represents a valuable resource for biomass-degrading enzyme discovery and studies of the rumen microbiome.
Journal ArticleDOI
Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery
TL;DR: A genome-resolved metagenomics workflow that enabled assembly of bacterial and archaeal genomes that were at least 80% complete and predicted and annotated a large set of rumen proteins will enable a better understanding of the structure and functions of the rumen microbiota.
Journal ArticleDOI
An improved pig reference genome sequence to enable pig genetics and genomics research
Amanda Warr,Nabeel A. Affara,Bronwen Aken,Hamid Beiki,Derek M. Bickhart,Konstantinos Billis,William Chow,Lel Eory,Heather Finlayson,Paul Flicek,Carlos García Girón,Darren K. Griffin,Richard Hall,Gregory Hannum,Thibaut Hourlier,Kerstin Howe,David A. Hume,David A. Hume,Osagie G. Izuogu,Kristi Kim,Sergey Koren,Haibo Liu,Nancy Manchanda,Fergal J. Martin,Dan J. Nonneman,Rebecca E. O’Connor,Adam M. Phillippy,Gary A. Rohrer,Benjamin D. Rosen,Laurie A. Rund,Carole A. Sargent,Lawrence B. Schook,Steven G. Schroeder,Ariel S. Schwartz,Benjamin M. Skinner,Richard Talbot,Elizabeth Tseng,Christopher K. Tuggle,Mick Watson,Timothy P L Smith,Alan Archibald +40 more
TL;DR: These highly contiguous assemblies plus annotation of a further 11 short-read assemblies provide an unprecedented view of the genetic make-up of this important agricultural and biomedical model species.
Journal ArticleDOI
Exome Sequencing: Current and Future Perspectives
TL;DR: The successful application of exome sequencing to crops has yielded results that may be used in selective breeding to improve production in these species, and there is potential for exome sequenc- ing to provide similar advances in livestock species that have not yet been realised.
Journal ArticleDOI
Errors in long-read assemblies can critically affect protein prediction.
Mick Watson,Amanda Warr +1 more
TL;DR: The prevalence of indel errors in the recently published Jain et al.3 MinION and Illumina assembly of the human genome is investigated and comparisons to previously published long-read assemblies from PacBio data and short-read Illumina assemblies of the same cell lines are included.