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Konstantinos Billis
Researcher at European Bioinformatics Institute
Publications - 20
Citations - 3234
Konstantinos Billis is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 12, co-authored 16 publications receiving 2045 citations. Previous affiliations of Konstantinos Billis include Wellcome Trust Sanger Institute & Lawrence Berkeley National Laboratory.
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Journal ArticleDOI
The Ensembl gene annotation system.
Bronwen Aken,Bronwen Aken,Sarah Ayling,Daniel Barrell,Laura Clarke,Valery Curwen,Susan Fairley,Julio Fernandez Banet,Konstantinos Billis,Carlos García Girón,Thibaut Hourlier,Kevin L. Howe,Andreas Kähäri,Felix Kokocinski,Fergal J. Martin,Daniel N. Murphy,Rishi Nag,Magali Ruffier,Michael Schuster,Y. Amy Tang,Jan-Hinnerk Vogel,Simon D. M. White,Amonida Zadissa,Paul Flicek,Stephen M. J. Searle +24 more
TL;DR: The Ensembl gene annotation system has been used to annotate over 70 different vertebrate species across a wide range of genome projects and generates the automatic alignment-based annotation for the human and mouse GENCODE gene sets.
Journal Article
Ensembl 2021
Kevin L. Howe,P. Achuthan,Jamie Allen,Jorge Alvarez-Jarreta,M. R. Amode,Irina M. Armean,A. G. Azov,Ruth Bennett,Jyothish Bhai,Konstantinos Billis,Sanjay Boddu,M. Charkhchi,Carla Cummins,L. Da Rin Fioretto,Claire Davidson,K. Dodiya,B. El Houdaigui,R. Fatima,Astrid Gall,C. Garcia Giron,Tiago Grego,C. Guijarro-Clarke,Leanne Haggerty,A. Hemrom,Thibaut Hourlier,Osagie G. Izuogu,Thomas Juettemann,V. Kaikala,M. Kay,Ilias Lavidas,T. Le,Diana Lemos,J. Gonzalez Martinez,J. C. Marugán,Thomas Maurel,Aoife McMahon,S. Mohanan,Benjamin Moore,Matthieu Muffato,D. N. Oheh,D. Paraschas,Anne Parker,Andrew Parton,I. Prosovetskaia,Manoj Pandian Sakthivel,A. I. A. Salam,Bianca M. Schmitt,Helen Schuilenburg,Dan Sheppard,E. Steed,Michal Szpak,M. Szuba,Kieron Taylor,Anja Thormann,Glen Threadgold,Brandon Walts,Andrea Winterbottom,Marc Chakiachvili,A. Chaubal,N. De Silva,B. Flint,Adam Frankish,Sarah E. Hunt,Gr, I. Isley, Langridge, N.,Jane E. Loveland,Fergal J. Martin,Jonathan M. Mudge,Joannella Morales,Emily Perry,Magali Ruffier,John Tate,David Thybert,Stephen J. Trevanion,Fiona Cunningham,Andrew D. Yates,Daniel R. Zerbino,Paul Flicek +76 more
TL;DR: Recent Ensembl developments are presented including two new website portals, which are designed to provide core tools and services for genomes as soon as possible and has been deployed to support large biodiversity sequencing projects.
Journal ArticleDOI
IMG 4 version of the integrated microbial genomes comparative analysis system
Victor M. Markowitz,I-Min A. Chen,Krishna Palaniappan,Ken Chu,Ernest Szeto,Manoj Pillay,Anna Ratner,Jinghua Huang,Tanja Woyke,Marcel Huntemann,Iain Anderson,Konstantinos Billis,Neha Varghese,Konstantinos Mavromatis,Amrita Pati,Natalia Ivanova,Nikos C. Kyrpides +16 more
TL;DR: Since the last report published in the 2012 NAR Database Issue, IMG’s annotation and data integration pipelines have evolved while new tools have been added for recording and analyzing single cell genomes, RNA Seq and biosynthetic cluster data.
Journal ArticleDOI
IMG/M 4 version of the integrated metagenome comparative analysis system.
Victor M. Markowitz,I-Min A. Chen,Ken Chu,Ernest Szeto,Krishna Palaniappan,Manoj Pillay,Anna Ratner,Jinghua Huang,Ioanna Pagani,Susannah G. Tringe,Marcel Huntemann,Konstantinos Billis,Neha Varghese,Kristin Tennessen,Konstantinos Mavromatis,Amrita Pati,Natalia Ivanova,Nikos C. Kyrpides +17 more
TL;DR: Since the last report published in the 2012 NAR Database Issue, IMG/M’s database architecture, annotation and data integration pipelines and analysis tools have been extended to copewith the rapid growth in the number and size of metagenomes handled by the system.
Journal ArticleDOI
A high-resolution mRNA expression time course of embryonic development in zebrafish
Richard White,John E. Collins,Ian M Sealy,Neha Wali,Christopher M. Dooley,Zsofia Digby,Derek L. Stemple,Daniel N. Murphy,Konstantinos Billis,Thibaut Hourlier,Anja Füllgrabe,Matthew P. Davis,Anton J. Enright,Elisabeth M. Busch-Nentwich,Elisabeth M. Busch-Nentwich +14 more
TL;DR: An mRNA expression time course of zebrafish development across 18 time points from 1 cell to 5 days post-fertilisation sampling individual and pools of embryos shows a class of over 100 previously uncharacterised zinc finger domain containing genes, located on the long arm of chromosome 4, is expressed in a sharp peak during zygotic genome activation.