Andrew M. Waterhouse

TL;DR: Jalview 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server.

TL;DR: MACSIMS is a new information management system that incorporates detailed analyses of protein families at the structural, functional and evolutionary levels and provides a unique environment that facilitates knowledge extraction and the presentation of the most pertinent information to the biologist.

TL;DR: Jalview is a Java application for editing and viewing sequence alignments, originally developed by Michele Clamp in 1997, that now has over 15,000 hits on Google, indicating wide usage as both a stand alone application, and applet based viewer for alignments derived from SRS, PFAM, and Interpro.

TL;DR: The 3D-Beacons Network allows researchers to collate coordinate files and metadata for experimentally determined and theoretical protein models from state-of-the-art and specialist model providers and also from the Protein Data Bank.

TL;DR: This article quantified how much of the natural protein universe was structurally illuminated by AlphaFold2 and modelled this diversity as an interactive sequence similarity network that can be navigated at https://uniprot3d.org/atlas/AFDB90v4.