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Anna Farne
Researcher at Wellcome Trust Sanger Institute
Publications - 12
Citations - 3624
Anna Farne is an academic researcher from Wellcome Trust Sanger Institute. The author has contributed to research in topics: Microarray databases & Gene expression profiling. The author has an hindex of 11, co-authored 12 publications receiving 3467 citations. Previous affiliations of Anna Farne include University of Cambridge & University of Hertfordshire.
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Journal ArticleDOI
ArrayExpress—a public repository for microarray gene expression data at the EBI
Helen Parkinson,Ugis Sarkans,Mohammadreza Shojatalab,Niran Abeygunawardena,Sergio Contrino,Richard M.R. Coulson,Anna Farne,Gonzalo Garcia Lara,Ele Holloway,Misha Kapushesky,P. Lilja,Gaurab Mukherjee,Ahmet Oezcimen,Tim F. Rayner,Philippe Rocca-Serra,Anjan Sharma,Susanna-Assunta Sansone,Alvis Brazma +17 more
TL;DR: ArrayExpress is a public repository for microarray data that supports the MIAME (Minimum Informa-tion About a Microarray Experiment) requirements and stores well-annotated raw and normalized data.
Journal ArticleDOI
ArrayExpress—a public database of microarray experiments and gene expression profiles
Helen Parkinson,Misha Kapushesky,Mohammadreza Shojatalab,Niran Abeygunawardena,Richard M.R. Coulson,Anna Farne,Ele Holloway,Nikolay Kolesnykov,P. Lilja,Margus Lukk,Roby Mani,Tim F. Rayner,Anjan Sharma,E. William,Ugis Sarkans,Alvis Brazma +15 more
TL;DR: The ArrayExpress Repository and Data Warehouse is a database of gene expression profiles selected from the repository and consistently re-annotated, which contains data from >50 000 hybridizations and >1 500000 individual expression profiles.
Journal ArticleDOI
ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression
Helen Parkinson,Misha Kapushesky,Nikolay Kolesnikov,Gabriella Rustici,Mohammadreza Shojatalab,Niran Abeygunawardena,Hugo Bérubé,Miroslaw Dylag,Ibrahim Emam,Anna Farne,Ele Holloway,Margus Lukk,James Malone,Roby Mani,Ekaterina Pilicheva,Tim F. Rayner,Faisal I. Rezwan,Anjan Sharma,Eleanor Williams,Xiangqun Zheng Bradley,Tomasz Adamusiak,Marco Brandizi,Tony Burdett,Richard M.R. Coulson,Maria Krestyaninova,Pavel Kurnosov,Eamonn Maguire,Sudeshna Guha Neogi,Philippe Rocca-Serra,Susanna-Assunta Sansone,Nataliya Sklyar,Mengyao Zhao,Ugis Sarkans,Alvis Brazma +33 more
TL;DR: This update describes the ArrayExpress developments over the last two years and describes the new summary database and meta-analytical tool of ranked gene expression across multiple experiments and different biological conditions.
Journal ArticleDOI
ArrayExpress update—trends in database growth and links to data analysis tools
Gabriella Rustici,Nikolay Kolesnikov,Marco Brandizi,Tony Burdett,Miroslaw Dylag,Ibrahim Emam,Anna Farne,Emma Hastings,Jon Ison,Maria Keays,Natalja Kurbatova,James Malone,Roby Mani,Annalisa Mupo,Rui Pedro Pereira,Ekaterina Pilicheva,Johan Rung,Anjan Sharma,Y. Amy Tang,Tobias Ternent,Andrew Tikhonov,Danielle Welter,Eleanor Williams,Alvis Brazma,Helen Parkinson,Ugis Sarkans +25 more
TL;DR: The ArrayExpress Archive of Functional Genomics Data ( ArrayExpress) is one of three international functional genomics public data repositories, alongside the Gene Expression Omnibus at NCBI and the DDBJ Omics Archive, supporting peer-reviewed publications.
Journal ArticleDOI
ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments
Helen Parkinson,Ugis Sarkans,Nikolay Kolesnikov,Niran Abeygunawardena,Tony Burdett,Miroslaw Dylag,Ibrahim Emam,Anna Farne,Emma Hastings,Ele Holloway,Natalja Kurbatova,Margus Lukk,James Malone,Roby Mani,Ekaterina Pilicheva,Gabriella Rustici,Anjan Sharma,Eleanor Williams,Tomasz Adamusiak,Marco Brandizi,Nataliya Sklyar,Alvis Brazma +21 more
TL;DR: The ArrayExpress Archive is one of the three international public repositories of functional genomics data supporting publications and provides queries based on technology and sample attributes such as disease, cell types and anatomy.