S
Sergio Contrino
Researcher at University of Cambridge
Publications - 24
Citations - 3301
Sergio Contrino is an academic researcher from University of Cambridge. The author has contributed to research in topics: Web service & Biological data. The author has an hindex of 16, co-authored 23 publications receiving 3116 citations. Previous affiliations of Sergio Contrino include Ontario Institute for Cancer Research & European Bioinformatics Institute.
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Journal ArticleDOI
ArrayExpress—a public repository for microarray gene expression data at the EBI
Helen Parkinson,Ugis Sarkans,Mohammadreza Shojatalab,Niran Abeygunawardena,Sergio Contrino,Richard M.R. Coulson,Anna Farne,Gonzalo Garcia Lara,Ele Holloway,Misha Kapushesky,P. Lilja,Gaurab Mukherjee,Ahmet Oezcimen,Tim F. Rayner,Philippe Rocca-Serra,Anjan Sharma,Susanna-Assunta Sansone,Alvis Brazma +17 more
TL;DR: ArrayExpress is a public repository for microarray data that supports the MIAME (Minimum Informa-tion About a Microarray Experiment) requirements and stores well-annotated raw and normalized data.
Journal ArticleDOI
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
Mark Gerstein,Zhi John Lu,Eric L. Van Nostrand,Chao Cheng,Bradley I. Arshinoff,Tao Liu,Kevin Y. Yip,R. Robilotto,Andreas Rechtsteiner,Kohta Ikegami,P. Alves,A. Chateigner,Marc D. Perry,Mitzi Morris,Raymond K. Auerbach,X. Feng,Jing Leng,A. Vielle,Wei Niu,Kahn Rhrissorrakrai,Ashish Agarwal,Roger P. Alexander,Galt P. Barber,Cathleen M. Brdlik,J. Brennan,Jeremy Brouillet,Adrian Carr,Ming Sin Cheung,Hiram Clawson,Sergio Contrino,Luke Dannenberg,Abby F. Dernburg,Arshad Desai,L. Dick,Andréa C. Dosé,Jiang Du,Thea A. Egelhofer,Sevinc Ercan,Ghia Euskirchen,Brent Ewing,Elise A. Feingold,Reto Gassmann,Peter J. Good,Philip Green,Francois Gullier,M. Gutwein,Mark S. Guyer,Lukas Habegger,Ting Han,Jorja G. Henikoff,Stefan R. Henz,Angie S. Hinrichs,H. Holster,Tony Hyman,A. Leo Iniguez,J. Janette,M. Jensen,Masaomi Kato,W. James Kent,E. Kephart,Vishal Khivansara,Ekta Khurana,John Kim,P. Kolasinska-Zwierz,Eric C. Lai,Isabel J. Latorre,Amber Leahey,Suzanna E. Lewis,Paul Lloyd,Lucas Lochovsky,Rebecca F. Lowdon,Yaniv Lubling,Rachel Lyne,Michael J. MacCoss,Sebastian D. Mackowiak,Marco Mangone,Sheldon J. McKay,D. Mecenas,Gennifer E. Merrihew,David M. Miller,A. Muroyama,John I. Murray,Siew Loon Ooi,Hoang Pham,T. Phippen,Elicia Preston,Nikolaus Rajewsky,Gunnar Rätsch,Heidi Rosenbaum,Joel Rozowsky,Kim Rutherford,P. Ruzanov,Mihail Sarov,Rajkumar Sasidharan,Andrea Sboner,P. Scheid,Eran Segal,Hyunjin Shin,C. Shou,Frank J. Slack,C. Slightam,Richard J.H. Smith,William C. Spencer,Eo Stinson,S. Taing,Teruaki Takasaki,D. Vafeados,Ksenia Voronina,Guilin Wang,Nicole L. Washington,Christina M. Whittle,Beijing Wu,Koon-Kiu Yan,Georg Zeller,Z. Zha,Mei Zhong,Xingliang Zhou,Julie Ahringer,Susan Strome,Kristin C. Gunsalus,Gos Micklem,X. Shirley Liu,Valerie Reinke,Stuart K. Kim,LaDeana W. Hillier,Steven Henikoff,Fabio Piano,Michael Snyder,Lincoln Stein,Jason D. Lieb,Robert H. Waterston +130 more
TL;DR: These studies identified regions of the nematode and fly genomes that show highly occupied targets (or HOT) regions where DNA was bound by more than 15 of the transcription factors analyzed and the expression of related genes were characterized, providing insights into the organization, structure, and function of the two genomes.
Journal ArticleDOI
InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.
Richard N. Smith,Jelena Aleksic,Daniela Butano,Adrian Carr,Sergio Contrino,Fengyuan Hu,Mike Lyne,Rachel Lyne,Alex Kalderimis,Kim Rutherford,Radek Stepan,Julie Sullivan,Matthew Wakeling,Xavier Watkins,Gos Micklem +14 more
TL;DR: Using InterMine, large biological databases can be created from a range of heterogeneous data sources, and the extensible data model allows for easy integration of new data types.
Journal ArticleDOI
Araport: the Arabidopsis Information Portal
Vivek Krishnakumar,Matthew R. Hanlon,Sergio Contrino,Erik S. Ferlanti,Svetlana Karamycheva,Maria Kim,Benjamin D. Rosen,Chia Yi Cheng,Walter Moreira,Stephen Mock,Joseph Stubbs,Julie Sullivan,Konstantinos Krampis,Jason R. Miller,Gos Micklem,Matthew W. Vaughn,Christopher D. Town +16 more
TL;DR: The Arabidopsis Information Portal (http://www.aaraport.org) as discussed by the authors is an online resource for plant biology research that allows the research community to develop and release modules that integrate, analyze and visualize Arabidopus data that may reside at remote sites.
Journal ArticleDOI
modMine: flexible access to modENCODE data
Sergio Contrino,Richard N. Smith,Daniela Butano,Adrian Carr,Fengyuan Hu,Rachel Lyne,Kim M. Rutherford,Alexis Kalderimis,Julie Sullivan,Seth Carbon,E. Kephart,Paul Lloyd,E. O. Stinson,Nicole L. Washington,Marc D. Perry,P. Ruzanov,Z. Zha,Suzanna E. Lewis,Lincoln Stein,Gos Micklem +19 more
TL;DR: The modMine database (http://intermine.modencode.org) described here has been built by the modENCODE Data Coordination Center to allow the broader research community to search for and download data sets of interest among the thousands generated by modENCode.