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Anne A. Leyrat
Researcher at Fluidigm Corporation
Publications - 14
Citations - 2741
Anne A. Leyrat is an academic researcher from Fluidigm Corporation. The author has contributed to research in topics: MRNA Sequencing & Transcriptome. The author has an hindex of 8, co-authored 14 publications receiving 2036 citations.
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Journal ArticleDOI
Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex.
Alex A. Pollen,Tomasz J. Nowakowski,Joe Shuga,Xiaohui Wang,Anne A. Leyrat,Jan H. Lui,Nianzhen Li,Lukasz Szpankowski,Brian Fowler,Peilin Chen,Naveen Ramalingam,Gang Sun,Myo Thu,Michael C Norris,Ronald Lebofsky,Dominique Toppani,Darnell W Kemp,Michael Wong,Barry Clerkson,Brittnee N. Jones,Shiquan Wu,Lawrence Knutsson,Beatriz Alvarado,Jing Wang,Lesley Suzanne Weaver,Andrew May,Robert C. Jones,Marc A. Unger,Arnold R. Kriegstein,Jay A. A. West +29 more
TL;DR: This paper identifies diverse cell types, including multiple progenitor and neuronal subtypes, and identifies EGR1 and FOS as previously unreported candidate targets of Notch signaling in human but not mouse radial glia by microfluidic single-cell capture and low-coverage sequencing of many cells.
Journal ArticleDOI
Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex
Tomasz J. Nowakowski,Aparna Bhaduri,Alex A. Pollen,Beatriz Alvarado,Mohammed A. Mostajo-Radji,Elizabeth Di Lullo,Maximilian Haeussler,Carmen Sandoval-Espinosa,Siyuan John Liu,Dmitry Velmeshev,Johain Ryad Ounadjela,Joe Shuga,Xiaohui Wang,Daniel A. Lim,Jay A. A. West,Anne A. Leyrat,W. James Kent,Arnold R. Kriegstein +17 more
TL;DR: The results support a mixed model of topographical, typological, and temporal hierarchies governing cell-type diversity in the developing human telencephalon, including distinct excitatory lineages emerging in rostral and caudal cerebral cortex.
Journal ArticleDOI
Molecular Identity of Human Outer Radial Glia during Cortical Development
Alex A. Pollen,Tomasz J. Nowakowski,Jiadong Chen,Hanna Retallack,Carmen Sandoval-Espinosa,Cory R. Nicholas,Joe Shuga,Siyuan John Liu,Michael C. Oldham,Aaron Diaz,Daniel A. Lim,Anne A. Leyrat,Jay A. A. West,Arnold R. Kriegstein +13 more
TL;DR: It is suggested that outer radial glia directly support the subventricular niche through local production of growth factors, potentiation of growth factor signals by extracellular matrix proteins, and activation of self-renewal pathways, thereby enabling the developmental and evolutionary expansion of the human neocortex.
Journal ArticleDOI
Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution.
Alex A. Pollen,Aparna Bhaduri,Madeline G. Andrews,Tomasz J. Nowakowski,Olivia S. Meyerson,Mohammed A. Mostajo-Radji,Elizabeth Di Lullo,Beatriz Alvarado,Melanie Bedolli,Max L. Dougherty,Ian T. Fiddes,Zev N. Kronenberg,Joe Shuga,Anne A. Leyrat,Jay A. A. West,Marina Bershteyn,Craig B. Lowe,Bryan J Pavlovic,Sofie R. Salama,David Haussler,David Haussler,Evan E. Eichler,Arnold R. Kriegstein +22 more
TL;DR: This work leveraged recent innovations that permit generating pluripotent stem cell-derived cerebral organoids from chimpanzee to identify human-specific features of cortical development and identifies 261 differentially expressed genes in human compared to both chimpanzee organoids and macaque cortex.
Journal ArticleDOI
Regulation of cell-type-specific transcriptomes by microRNA networks during human brain development
Tomasz J. Nowakowski,Neha Rani,Mahdi Golkaram,Hongjun Zhou,Beatriz Alvarado,Kylie Huch,Jay A. A. West,Anne A. Leyrat,Alex A. Pollen,Arnold R. Kriegstein,Linda R. Petzold,Kenneth S. Kosik +11 more
TL;DR: It is shown that miRNA-mRNA interactions operate as functional modules that often correspond to cell-type identities and undergo dynamic transitions during brain development, which are highly dynamic during development and over the course of evolution.